BAC Information

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BAC

Clone NameMSMg01-534O02
Chromosome13 (Build37)
Map Location 61,440,675 - 61,441,273
singlet/doubletsinglet
Overlap genenone
Upstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362
Downstream geneCts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534O02.T7 (MSMg01no534_o02.b1)MSMg01-534O02.TJ (MSMg01no534_o02.g1)
ACCAG602462AG602463
length728719
length of high quality
(start - end)		605 (42 - 646)44 (63 - 106)
definitionCHROMAT_FILE: MSMg01no534_o02.b1 PHD_FILE: MSMg01no534_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:32 2005CHROMAT_FILE: MSMg01no534_o02.g1 PHD_FILE: MSMg01no534_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTAGATTCATTTATTGTCATGTTAGTGAGTGATGGGCATGTCTCTAAA
GATATCATTGATCAGCTAGCACCTAGAGAATAAGTCATAGAGAATTTGGA
GTTTCATTATGTCCTTAGTAACAGTGATGATTTGATTGCTTTTAGTAATA
AATGTTTATGTTGTTACTGAAGCCAAAAACAAGGTAATTTTCCTCAGTTG
TCATCAGCTTAATCTCTCATTACTTCTTTGTATTCTTTACATATTCTTCA
TGTACCTGATAGGACTGAAAAAAATATTGATATTCACTTTTTTGTGTTGA
AAACTGAAATCTCAATATCCCAAAGCCTGGTAAACAATAAGGAGTATTGT
GGGGGGATTTTCAGCCACATATGTAGGACCTATTTCTTGATGTTACTGTG
AGGAGTACAATAAAAGTAAAGTGTACCAGACCTCTGCACACCTTCCCCAC
CAGAGGAGAGTCAGCGAACAGGGAGGAATCTGATGCTGGGTCTCAGGTGA
GAGTGCCAGCTTGTATTCTGGGTGTCAGAGACCAGTCCACACAGGATAGC
ACAGTGTCCACAGAAGCAACAGAGCTTCCTAGACAGGGTTCCTTCAGGCA
TTCATCTACAGCCAGGAGGCAGAGCTGAGTTCCAGACCTCTGTGCAGCTT
CCCTGCCAGAGGAGAGCTTGTCTGCATA

GCATGGGGAGGCCTGGCGGCGCCGTCGTCAGCGGAGGTGACACTATAGAA
TGTCAGCGGAATCTCACAGTTTAAAATGGAAGGTTTTGGTTACTGAACCT
TACAATTGGGGGGGGGGGNNNCCCCCNTTTTTTTTTTTTTCCAAAAAAGG
GCGCGGGGGCGGCTTTTTTTTCTCTTTTTCCCCTGGGCCGCGAACAGTGT
CGTGTTCCTTCGAAAAAACACCCCCCCCCCCACAACGCAGGGGGGGCGCT
TGTGTTGGGGGTTGCGCCCCCTCCCCCCGCTTGTTTCTGTCGCAAGAAGC
AGGCGGCTTGTCGGCGGGCGCGTGGTTCGCGGCCGCCGCTCCGCCCTTCC
TCTCTTCCTGCTCCTCTCAGGGGGGGGGGCCGGCGCATTTGTCGTTTCGG
GCGGGGGTGGCGGCGGCCTCGCCCTTTTTTTTTTGGCCGGGCGGGGGGGG
GTGTGCTGCGCTATGTGGGGCCGCGGTCGTTTTATTTCCGCGGGCCGTGT
ACGGGTGTGGTGCTGCACGTCGCCTCGTCGCGGGGTGGTGCTGCCCGGCT
CACCGCGGCGCTTATGACGGTGGACGGGGGTGGGGGGGGGCCGGTGGGCG
CTTGCTACTCGGGGGGGGCCGCGCCCCTTGCTCGTCGCCCAACGCCCACA
CTCTGCCGTTTTTATTTTCGCGCCGCGCCCGGTTCTTCCCTCTCGTTCTG
CTGGGTTAGCGGGCGGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_o02.b1 MSMg01no534_o02.b1 CHROMAT_FILE:
MSMg01no534_o02.b1 PHD_FILE: MSMg01no534_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:32 2005
         (605 letters)



>mm_chr13_61440471_61441473
          Length = 1003

 Score = 1139 bits (589), Expect = 0.0
 Identities = 598/601 (99%), Gaps = 2/601 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctagattcatttattgtcatgttagtgagtgatgggcatgtctctaaagatat 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gaattctctagaatcatttattgtcatgttagtgagtgatgggcatgtctctaaagatat 744

                                                                       
Query: 65  cattgatcagctagcacctagagaataagtcatagagaatttggagtttcattatgtcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cattgatcagctagcacctagagaataagtcatagagaatttggagtttcattatgtcct 684

                                                                       
Query: 125 tagtaacagtgatgatttgattgcttttagtaataaatgtttatgttgttactgaagcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 683 tagtaacagtgatgatttgattgcttttagtaataaatgtttatgttgttactgaagcc- 625

                                                                       
Query: 185 aaaacaaggtaattttcctcagttgtcatcagcttaatctctcattacttctttgtattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaacaaggtaattttcctcagttgtcatcagcttaatctctcattacttctttgtattc 565

                                                                       
Query: 245 tttacatattcttcatgtacctgataggactgaaaaaaatattgatattcacttttttgt 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 564 tttacatattcttcatgtacctgataggactg-aaaaaatattgatattcacttttttgt 506

                                                                       
Query: 305 gttgaaaactgaaatctcaatatcccaaagcctggtaaacaataaggagtattgtggggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttgaaaactgaaatctcaatatcccaaagcctggtaaacaataaggagtattgtggggg 446

                                                                       
Query: 365 gattttcagccacatatgtaggacctatttcttgatgttactgtgaggagtacaataaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gattttcagccacatatgtaggacctatttcttgatgttactgtgaggagtacaataaaa 386

                                                                       
Query: 425 gtaaagtgtaccagacctctgcacaccttccccaccagaggagagtcagcgaacagggag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaaagtgtaccagacctctgcacaccttccccaccagaggagagtcagcgaacagggag 326

                                                                       
Query: 485 gaatctgatgctgggtctcaggtgagagtgccagcttgtattctgggtgtcagagaccag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatctgatgctgggtctcaggtgagagtgccagcttgtattctgggtgtcagagaccag 266

                                                                       
Query: 545 tccacacaggatagcacagtgtccacagaagcaacagagcttcctagacagggttccttc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccacacaggatagcacagtgtccacagaagcaacagagcttcctagacagggttccttc 206

            
Query: 605 a 605
           |
Sbjct: 205 a 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1003
Length adjustment: 10
Effective length of query: 595
Effective length of database: 993
Effective search space:   590835
Effective search space used:   590835
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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