BAC Information

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BAC

Clone NameMSMg01-536E03
Chromosome13 (Build37)
Map Location 33,607,558 - 33,608,028
singlet/doubletsinglet
Overlap geneLOC100041370
Upstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g
Downstream geneEG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536E03.T7 (MSMg01no536_e03.b1)MSMg01-536E03.TJ (MSMg01no536_e03.g1)
ACCAG603514AG603515
length765772
length of high quality
(start - end)
431 (52 - 482)466 (80 - 545)
definitionCHROMAT_FILE: MSMg01no536_e03.b1 PHD_FILE: MSMg01no536_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:18 2005CHROMAT_FILE: MSMg01no536_e03.g1 PHD_FILE: MSMg01no536_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCAGAAGAAAGAGATAAAGAGACTTTGAACACGAGAAAG
AGAGAGAGAGAAAAAGTTTCAGAAAAGCAGTTATCCCTTGTTTGGGACTT
TTTAGCAAAAGAGAAGAAAAATGGAAATACACTATTCCAGAGCTCTCCTA
GAGACAGTAGGAAATTGGGATGAGAGACTTCCTGCATCCTCTCTGGATCC
CAATGGAGATATACTTAAGTTCTTGTTAGTATATTTGTGTCCATTAAGAT
ATCAAGTTCTCTTCCCTCTGTCTATTTTCTGTCCTTGGTGCACCAATCTG
CCCATATGTCTGTCAATTTATGTGTTTTTTTTTTTTGATCTGTGTTGTTT
CTTGTTGAAGAAGAAAGGTCAAAAGTTTACCTGCTGGCTGTCCATCCATT
GATTTAGTTTAACTTGTTTAAAAGGCAGGCTCTATTTGCACAGCAGATAC
TGACAAATTATACTGCACTGTAGCTGGGAGTCAAGCACAGCTGGAAAAGC
CCTGTTTGAGGCTGATTACATTCGCGAGCTACTCTCTAAGGAGCCAACAG
CTTTTTTGCCTGGAACTTTGGTTATACCACAATCCGCCTTTATCTTGATT
CCTTCTCATTTGCCGCTCATTTTTTACCTACCCGGTGGTTCGCCGCCATC
CTCTTTTACCATCAGGTTCCCTTCCAAGAATCCTTTTTTTTCCGGGGTTA
CCCTATCCCTGTGCN
CTCTCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCCCCCACCCATTATTAA
GAGAACCCAGGGTTCAGAGACACACAGGTGGCACAGAAATGAGTCAGATC
TTTGCATTGAGACATTGAGATCCCTGGTATATATGGTGAAGGCTCTGTGG
GAATAGGTAACATTGTTGGTGCAGTGTCCAGGACTGTTCCAGGAGATCAA
GATCCACAATTATAATCATTCAGTCCTTGTGACCATTCCCCTGAGCCAAG
ATCCTGGGTACCCTGAATGAAACCTAATGTGGGAAATATACCAAAGATAT
GCCTATTGTCATTGAAGTTCCTGGAGTGTGATGATTGTCAGATAGAGGAG
GTTCAAGCATTCTCTAATGTTGGAGAAGGAGGGTGTATGGGCCACCTAAA
CTGTATACTGGCTATCAGAAAAAAAATGTTTTTTGTTTTTTTTTGGGGGG
GGTTTATTAGGATTTATTTTTATCAGATGTTTTCTTTATTTACATTCCAA
ATGCTATCCCCTCTCCTTTGTTTCCACTCCCCAAACTCCTATCCCCTTCC
CCATCCCTCTGATTTACCGAACCATTCATTTCCTTGTTTCCTGGCTTTTA
TTATTCCCCCCATTCTTGAGCGCATATCACCCCTTCTCAGAACCAAGGGA
TCTTCTCTCTAACTCTTTGATGTATATAATCTGGGTCCCATCTCTCTTGG
TTTCCTACTTGCTCTCCTTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_e03.g1 MSMg01no536_e03.g1 CHROMAT_FILE:
MSMg01no536_e03.g1 PHD_FILE: MSMg01no536_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:18 2005
         (466 letters)



>mm_chr13_33607358_33608228
          Length = 871

 Score =  830 bits (429), Expect = 0.0
 Identities = 459/471 (97%), Gaps = 5/471 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actccccccacccattattaagagaacccagggttcagagacacacaggtggcacagaaa 60
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 201 actccccccacccattattaagagatctcagggttcagagacacacaggtggcacagaaa 260

                                                                       
Query: 61  tgagtcagatctttgcattgagacattgagatccctggtatatatggtgaaggctctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagtcagatctttgcattgagacattgagatccctggtatatatggtgaaggctctgtg 320

                                                                       
Query: 121 ggaataggtaacattgttggtgcagtgtccaggactgttccaggagatcaagatccacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaataggtaacattgttggtgcagtgtccaggactgttccaggagatcaagatccacaa 380

                                                                       
Query: 181 ttataatcattcagtccttgtgaccattcccctgagccaagatcctgggtaccctgaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttataatcattcagtccttgtgaccattcccctgagccaagatcctgggtaccctgaatg 440

                                                                       
Query: 241 aaacctaatgtgggaaatataccaaagatatgcctattgtcattgaagttcctggagtgt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 aaacctaatgtgggaaatataccaaagatatgcctattgtcattgaagttcccggagtgt 500

                                                                       
Query: 301 gatgattgtcagatagaggaggttcaagcattctctaatgttggagaaggagggtgtatg 360
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 501 gatgattgtcagatagaggaggttcaagcattctataatcttggagaaggagggtgtatg 560

                                                                       
Query: 361 ggccacctaaactgtatactggctatcagaaaaaaaatgttttttgtttttttttggggg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 ggccacctaaactgtatactggctatcagaaaaaaaatgttttttgttttttttgggggg 620

                                                              
Query: 421 ggg----tttattaggatttattttt-atcagatgttttctttatttacat 466
           |||    ||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 621 ggggggatttattaggatttattttttattagatgttttctttatttacat 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 871
Length adjustment: 10
Effective length of query: 456
Effective length of database: 861
Effective search space:   392616
Effective search space used:   392616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)