Query= MSMg01no536_j07.b1 MSMg01no536_j07.b1 CHROMAT_FILE:
MSMg01no536_j07.b1 PHD_FILE: MSMg01no536_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:44 2005
(592 letters)
>mm_chr13_78640294_78641284
Length = 991
Score = 1083 bits (560), Expect = 0.0
Identities = 581/588 (98%), Gaps = 1/588 (0%)
Strand = Plus / Plus
Query: 5 ggaattcgctgcatattttcctctgtctagccaagggactagccagctacctcctgggaa 64
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaatttgttgcatattttcctctgtctagccaagggactagccagctacctcctgggaa 264
Query: 65 actcacatggacaatagtttcttagaatagcttggggaagaggaaaaggagcccaagagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actcacatggacaatagtttcttagaatagcttggggaagaggaaaaggagcccaagagt 324
Query: 125 tatcagatttgccccatcagtcagtcacaaaccaaagcttgtgcaaccccacagtttatc 184
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatcagatttgccccattagtcagtcacaaaccaaagcttgtgcaaccccacagtttatc 384
Query: 185 cctgctgcaacagttgatcagagggacatacagataagcatggcaggtaagagacacctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgctgcaacagttgatcagagggacatacagataagcatggcaggtaagagacacctc 444
Query: 245 atggaatgtgacaaatgaacaattttaaaccgacatttacttttacaagtcagtcattta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atggaatgtgacaaatgaacaattttaaaccgacatttacttttacaagtcagtcattta 504
Query: 305 agtgggttctttgtatggagcattttcaatttttatgtcaccttagagacttttgcattt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtgggttctttgtatggagcattttcaatttttatgtcaccttagagacttttgcattt 564
Query: 365 cttacaattcttctgcacattaaaaatgaattatagtctcatccactttcagaaaaaaaa 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttacaattcttctgcacattaaaaatgaattatagtctcatccactttcagaaaaaaat 624
Query: 425 ttggaagaaattttaaaagcagacaaaggccacatgtgcctcaagatgctccagcaagga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttggaagaaattttaaaagcagacaaaggccacatgtgcctcaagatgctccagcaagga 684
Query: 485 ctttctctctttgatctcctgatgacagaggaaaagaaggatccaaatctttgtatgaat 544
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 685 ctttctctctttgatctcctgatgacaaaggaaaagaaggatccaaatctttgtatgaat 744
Query: 545 ctagtatttgctgccatttagaacttttttttttctctttctcccatt 592
||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 745 ctagtatttgctgccatttagaactattttttt-ctctttctcccatt 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 991
Length adjustment: 10
Effective length of query: 582
Effective length of database: 981
Effective search space: 570942
Effective search space used: 570942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_j07.g1 MSMg01no536_j07.g1 CHROMAT_FILE:
MSMg01no536_j07.g1 PHD_FILE: MSMg01no536_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:44 2005
(592 letters)
>mm_chr13_78804119_78805110
Length = 992
Score = 957 bits (495), Expect = 0.0
Identities = 516/523 (98%), Gaps = 2/523 (0%)
Strand = Plus / Minus
Query: 71 tagg-aaaaaagtaatatccttttgagcaacaaaaagaaaaaaaggcctaggagccaaag 129
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 992 taggaaaaaaagtaatatccttttgagcaacaaaaag-aaaaaaggcctaggagccaaag 934
Query: 130 cccactgaggttatactcttggccttactaaaaatgaaaatctgggcaagtgcattgtta 189
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 cccactgaagttatactcttggccttactaaaaatgaaaatctgggcaagtgcattgtta 874
Query: 190 attctgtttttatcatctgtaaaacggagcaaacaatatctgtcttgcggagtcccagta 249
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 873 attctgtttttatcatctgtaaaacggaggaaacaatatctgccttgcggagtcccagta 814
Query: 250 aaaatgaaacaaaataatgtaatcacatgctgccaaatataaaagagtgtagctgctact 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aaaatgaaacaaaataatgtaatcacatgctgccaaatataaaagagtgtagctgctact 754
Query: 310 ggaaatcatattagtctcatttttttcttttctccaagtgcttaataaagtactggacac 369
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 753 ggaaatcatattagtctcatttttttcttttctcccagtgcttaataaagtactggacac 694
Query: 370 atgacttcaccctcagaatggaatgtttaaagacaacaaaacatttcctttgaaattatc 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 atgacttcaccctcagaatggaatgtttaaagacaacaaaacatttcctttgaaattatc 634
Query: 430 tctatgcatgaatctaagattgataatttgcatgttcacaagaaaataagcacagatctg 489
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 633 tctatgcatgaatctaagattgataatttgcatgttcacaagaaaataagcacatatctg 574
Query: 490 accgtataattcttaagcctggggaaacagaaacagcaaacatatttgctcacatttcta 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 accgtataattcttaagcctggggaaacagaaacagcaaacatatttgctcacatttcta 514
Query: 550 aaataatgtctaacattatcagctgggaaattttcttttaggt 592
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaataatgtctaacattatcagctgggaaattttcttttaggt 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
