BAC Information

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BAC

Clone NameMSMg01-536M10
Chromosome13 (Build37)
Map Location 37,949,084 - 38,068,997
singlet/doubletdoublet
Overlap geneRreb1
Upstream geneF13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624
Downstream geneSsr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536M10.T7 (MSMg01no536_m10.b1)MSMg01-536M10.TJ (MSMg01no536_m10.g1)
ACCAG603906AG603907
length770786
length of high quality
(start - end)		518 (50 - 567)492 (80 - 571)
definitionCHROMAT_FILE: MSMg01no536_m10.b1 PHD_FILE: MSMg01no536_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:59 2005CHROMAT_FILE: MSMg01no536_m10.g1 PHD_FILE: MSMg01no536_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,068,484 - 38,068,997)(37,949,084 - 37,949,575)
sequence
CTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTCAGTATGGTGTGAAATCATTACAGTTTAACTCAGAACA
GTGTATATGCCCTCATCAAGACTGTGATAGACTAGATCCTTGATTTTTCT
TTGAGCTCCAAAATTGTTAGCTTAAATGAAGTAGAGTTAAATTAGGTAGA
GTTGAGGTACTTTACTTCCGTGGTGTTGGGTAGCATCGGCAGCCATGTAA
CGAGTCCGTGAACTTGGCCTGTGTTTCCTAAGTAAATCCTTACTCGGTTC
AGAGAGGAGCAGCTGGTTCTCATTTCTTGTTAGCGGTGTGCTTGTATGCT
TGTGATGGATGATAGATGCGAGGTTTCGCCTCTGCAAAGTACTTGCTAGG
GTGCACAGGACTCAGCAGCTGCAGGTAGCTGAGCAATAGTTGGTTCAGGG
CATTAATTGTATTGATGTCTGCTTGGTTCTGTCCCTTTTTCCTTTACACA
AAACTAGACTGATTCTCTCTGAAGTGCTGGGAGTCTTTCTGGATTTTAGA
ATTGGGTGGGAACACACACACTGCGGCTGGTGACCCTGCAGTCAGTCGCC
CGTGTTAGAAAGTGGGAAGGGAAGCTGGTCTGTTAAACGTGAGTCCCGAG
CTGTGTTCCGCGGGGGCCCCCCTATTATGACTTCCTAACACACTCCCTGG
GGTAGTGCGTTGTCCTCGTTCTTGTAAATATCCCTTGATTTAAGGGCCTG
TAGCCCATTGTTAATTTGGC

NNCCCGATGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATACAGCATAAAACATGGGA
GCTCCACATATCATGTAATATTCTAGTAGAGCTCTGGCTGTCAGCTCTGA
AAGTAAGAACCTGGTTCTCCCATAATTTTTTTTTTTAAGCAAAAATAAAA
TTTCAAACGCGGATAACTAAGCTGCCCTCTTCCTGCCCCTGCGACCCAGG
GGTTTTAAAGCGGCGACGGCAGACCGGGTCGCCCACTCGCCTTGCTGTTT
GCCCAGCGGTCGGTCGCTCCTGGGTCTGCTCCGACCACAGGGGCAGTAAC
CTTGAGGTTAAGGTTGCCGAAGAAACCCGAAGCCCTCAGTGTACGCTTTA
AACGAGCCTGGGCGTCCTCAGGCCCGGGTCTGTCCTTGTCAGGACGCGCC
GGGTGACCCCAGAGCTTCCAGGCCTGTGACCCCGCGGGGCATCTCTCCCC
GGTTGGGTTCGGCTTCCCAGAGAAGGGCTTGAGGGAGACTGGAGGTGAGC
AGCCATTATAGAGGCACGCGTAGGCGGGGACAGGAGGCGCCCGAGCCGCT
AAGCCAGGCCCTCTAGGACCGGGGTCGGTGACCTCCTCCGGCCGAGGGGA
CTTGCGGTGCTTGGGCCAGCGCCGCGGGACCTGCTCGACGCTCCTCACCT
CCGCTCCAGTGCTGGGGACTCCCCGAGCGGGGCGGGGGAGCTGTTAATCT
CGGGAGCGCCCCCCCCCGATTGGTTGATGCGCGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_m10.b1 MSMg01no536_m10.b1 CHROMAT_FILE:
MSMg01no536_m10.b1 PHD_FILE: MSMg01no536_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:59 2005
         (518 letters)



>mm_chr13_38068280_38069197
          Length = 918

 Score =  986 bits (510), Expect = 0.0
 Identities = 513/514 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttcagtatggtgtgaaatcattacagtttaactcagaacagtgtatatgccct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gaattccttcagtatggtgtgaaatcattacagtttaactcagaacagtgtatatgccct 659

                                                                       
Query: 65  catcaagactgtgatagactagatccttgatttttctttgagctccaaaattgttagctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 catcaagactgtgatagactagatccttgatttttctttgagctccaaaattgttagctt 599

                                                                       
Query: 125 aaatgaagtagagttaaattaggtagagttgaggtactttacttccgtggtgttgggtag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aaatgaagtagagttaaattaggtagagttgaggtactttacttccgtggtgttgggtag 539

                                                                       
Query: 185 catcggcagccatgtaacgagtccgtgaacttggcctgtgtttcctaagtaaatccttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 catcggcagccatgtaacgagtccgtgaacttggcctgtgtttcctaagtaaatccttac 479

                                                                       
Query: 245 tcggttcagagaggagcagctggttctcatttcttgttagcggtgtgcttgtatgcttgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcggttcagagaggagcagctggttctcatttcttgttagcggtgtgcttgtatgcttgt 419

                                                                       
Query: 305 gatggatgatagatgcgaggtttcgcctctgcaaagtacttgctagggtgcacaggactc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gatggatgatagatgcgaggtttcgcctctgcaaagtacttgctagggtgcacaggactc 359

                                                                       
Query: 365 agcagctgcaggtagctgagcaatagttggttcagggcattaattgtattgatgtctgct 424
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agcagttgcaggtagctgagcaatagttggttcagggcattaattgtattgatgtctgct 299

                                                                       
Query: 425 tggttctgtccctttttcctttacacaaaactagactgattctctctgaagtgctgggag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tggttctgtccctttttcctttacacaaaactagactgattctctctgaagtgctgggag 239

                                             
Query: 485 tctttctggattttagaattgggtgggaacacac 518
           ||||||||||||||||||||||||||||||||||
Sbjct: 238 tctttctggattttagaattgggtgggaacacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no536_m10.g1 MSMg01no536_m10.g1 CHROMAT_FILE:
MSMg01no536_m10.g1 PHD_FILE: MSMg01no536_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:59 2005
         (492 letters)



>mm_chr13_37948884_37949775
          Length = 892

 Score =  944 bits (488), Expect = 0.0
 Identities = 491/492 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatacagcataaaacatgggagctccacatatcatgtaatattctagtagagctctggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatacagcataaaacatgggagctccacatatcatgtaatattctagtagagctctggct 260

                                                                       
Query: 61  gtcagctctgaaagtaagaacctggttctcccataatttttttttttaagcaaaaataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcagctctgaaagtaagaacctggttctcccataatttttttttttaagcaaaaataaa 320

                                                                       
Query: 121 atttcaaacgcggataactaagctgccctcttcctgcccctgcgacccaggggttttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcaaacgcggataactaagctgccctcttcctgcccctgcgacccaggggttttaaa 380

                                                                       
Query: 181 gcggcgacggcagaccgggtcgcccactcgccttgctgtttgcccagcggtcggtcgctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcggcgacggcagaccgggtcgcccactcgccttgctgtttgcccagcggtcggtcgctc 440

                                                                       
Query: 241 ctgggtctgctccgaccacaggggcagtaaccttgaggttaaggttgccgaagaaacccg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgggtctgctccgaccacaggggcagtaaccttgaggttaaggttgccgaagaaacccg 500

                                                                       
Query: 301 aagccctcagtgtacgctttaaacgagcctgggcgtcctcaggcccgggtctgtccttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagccctcagtgtacgctttaaacgagcctgggcgtcctcaggcccgggtctgtccttgt 560

                                                                       
Query: 361 caggacgcgccgggtgaccccagagcttccaggcctgtgaccccgcggggcatctctccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggacgcgccgggtgaccccagagcttccaggcctgtgaccccgcggggcatctctccc 620

                                                                       
Query: 421 cggttgggttcggcttcccagagaagggcttgagggagactggaggtgagcagccattat 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggttgggttcggcttcccagagaagggcttgagggagactggaggtgagcagccattat 680

                       
Query: 481 agaggcacgcgt 492
           ||||||||||||
Sbjct: 681 agaggcacgcgt 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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