Query= MSMg01no536_n15.b1 MSMg01no536_n15.b1 CHROMAT_FILE:
MSMg01no536_n15.b1 PHD_FILE: MSMg01no536_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:04 2005
(574 letters)
>mm_chr13_51806793_51807766
Length = 974
Score = 1065 bits (551), Expect = 0.0
Identities = 566/571 (99%)
Strand = Plus / Plus
Query: 4 ggaattccagagacatcacatggtagaggcaggacagatggctagccacagaagcaggcg 63
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 204 ggaattccagagacagcacatggtagaggcaggacagatgactagccacagaagcaggcg 263
Query: 64 tccatatgtccccaaccacggcctagcccaagaatactgaagacaagttatgtaatcaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 tccatatgtccccaaccacggcctagcccaagaatactgaagacaagttatgtaaccaaa 323
Query: 124 gcaatacttccacgtgggacaggatcacagaatacgaaaagagccaaacacattcaatga 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcaatacttccatgtgggacaggatcacagaatacgaaaagagccaaacacattcaatga 383
Query: 184 caagcaaaaccaccccatctgtgtcacatcagcgtgccactggctttggctcctgcagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caagcaaaaccaccccatctgtgtcacatcagcgtgccactggctttggctcctgcagca 443
Query: 244 ttcccagctgtgacccaggagttaaacaagtgatgggaggcctccttcccaccacagacc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcccagctgtgacccaggagttaaacaagtgatgggaggcctccttcccaccacagacc 503
Query: 304 ctggccccgcagaccatcctagggcaaacacatgaacatccactaagagctccttttgtg 363
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 504 ctggccccgcagaccatcctagggcaaacacatgatcatccactaagagctccttttgtg 563
Query: 364 ccctctttgcctgctcaatcctagtcattttcagggagctgacgactgagacaacacaga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccctctttgcctgctcaatcctagtcattttcagggagctgacgactgagacaacacaga 623
Query: 424 cagttacaaactatactccactctgggctggaaagaaataaggcggctcccgtgtgcgtg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagttacaaactatactccactctgggctggaaagaaataaggcggctcccgtgtgcgtg 683
Query: 484 attgcattttctgcaatttcagttacctgtgattagtgacacactgaaaatatcacaagt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attgcattttctgcaatttcagttacctgtgattagtgacacactgaaaatatcacaagt 743
Query: 544 gctcactctgactaattttttcctctttgag 574
|||||||||||||||||||||||||||||||
Sbjct: 744 gctcactctgactaattttttcctctttgag 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_n15.g1 MSMg01no536_n15.g1 CHROMAT_FILE:
MSMg01no536_n15.g1 PHD_FILE: MSMg01no536_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:04 2005
(536 letters)
>mm_chr13_51972328_51973262
Length = 935
Score = 994 bits (514), Expect = 0.0
Identities = 523/526 (99%), Gaps = 1/526 (0%)
Strand = Plus / Minus
Query: 1 aggtatttgcgcttgtgtggtaaacacttgagcaactgggttgtctgcccatcactggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aggtatttgcgcttgtgtggtaaacacttgagcaactgggttgtctgcccatcactggaa 466
Query: 61 catgttttctaaaattcttggtagttgtagttaaaagcaaagaggtgataaaaaaaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 465 catgttttctaaaattcttggtagttgtagttaaaagcaaagaggtgat-aaaaaaaaat 407
Query: 121 aaggagaattaaaagatgggccgttcccaccgctaagcaagacttgactgcttcctggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaggagaattaaaagatgggccgttcccaccgctaagcaagacttgactgcttcctggga 347
Query: 181 ctcgtgccagagctgaaggagtcagaaacggggcctacctgtgtccaccacagtgcccag 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 346 ctcgtgccagagctgaaggagtcagaaatggggcctacctgtgtccaccacagtgcccag 287
Query: 241 catgaccttttccaccattgaccaggattaattacaaaggaaatgggacagaggtggttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 catgaccttttccaccattgaccaggattaattacaaaggaaatgggacagaggtggttg 227
Query: 301 tttgtatctacaaacatcaccgccctggggttgaatagatgggtcggctgttaaaagcgc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 226 tttgtatctacaaacatcaccgccctggggttgaatagatgggtcggctgttaaaagcac 167
Query: 361 ttgctgctcttgcagagaacctgagttcaattcccaacaactatattgagcagcttgtac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ttgctgctcttgcagagaacctgagttcaattcccaacaactatattgagcagcttgtac 107
Query: 421 gaccgaccttgtaatcccagctccaggataggatctccagctccatcttctagcctccac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 gaccgaccttgtaatcccagctccaggataggatctccagctccatcttctagcctccac 47
Query: 481 gggtatctgcctttatatacacatacccgaacacaagcacataccc 526
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 gggtatctgcctttatatacacatacccgaacacaagcacataccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space: 486550
Effective search space used: 486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
