BAC Information

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BAC

Clone NameMSMg01-536O20
Chromosome13 (Build37)
Map Location 30,251,143 - 30,440,123
singlet/doubletdoublet
Overlap geneMboat1, Agtr1a
Upstream geneLOC100041135, Cdkal1, E2f3
Downstream geneUqcrfs1, Dusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743, LOC100041257, LOC100041266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536O20.T7 (MSMg01no536_o20.b1)MSMg01-536O20.TJ (MSMg01no536_o20.g1)
ACCAG604020AG604021
length791796
length of high quality
(start - end)
570 (50 - 619)520 (79 - 598)
definitionCHROMAT_FILE: MSMg01no536_o20.b1 PHD_FILE: MSMg01no536_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:10 2005CHROMAT_FILE: MSMg01no536_o20.g1 PHD_FILE: MSMg01no536_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,439,558 - 30,440,123)(30,251,143 - 30,251,662)
sequence
NTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATC
CGCGGAATTCTTTATTTTATCAACCACCACATATCAATTCATTTAAGTTA
AGACAAATGAGACACAGCTCTTACTCCAAAAATTCTGAGACCTTACTGAA
AGAAGGACGACAGTGATGTAGGTAAGCAAGCCAACTGTCACATCCACGTG
TTAGTCCTTAGCTCAAGGTGACATAGGTCCCTTCACATCATTAAAAGAAT
TAAGAATATAACACTAGACTAATAAATGAAATATTTAGGGATACAAGCTA
ATATGAAAGGCATGAAGGAGTCTGTAACCCAGACCCCTAAGAAACCATGA
ATCTCAAACTGCTTTAAAATGCCCAAGTTAAAAAGAGCATATAACTCTCC
TTTCCCTGGCCATGAATGTCCAGTGTATTCTTTAAGACTGTGTTTCTTCA
CAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCTCCCAA
TGGAGGAGCTAGAGAAAGAACCCAAGGAGCTAAAGGGATCTGCAACCCTA
TAGGTGGAACAACATTATGAACTAACCAGTACCCTGGAGCTCTTGACTCT
AGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGA
GGCCCATTGGACACGCAAACTGTATATGCCCCAGTACAGGGGGACATCAG
AGCCAAAAAAATGGNAATGGTGGGGTAGGGAAGTCCCGGGGGAAGCTTTT
TTTTTTTCCTTCTCCTTTTTTCTCTTTTTTCCTTTCTCTTC
NNNTTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAGTCTGTTCTTCTCTTC
AGAATCAGTAAAATGTAACCGCATTAAGACGGCTAGGCCTAGGGTAGGGT
AGGGGACTGCACACACCTTTGAAAACTCAGCAATTCGGGGGCAGAGGAAG
GACGATCAATATTACCTTGAGGCTAGCCTGATCTACACCTTGAGTTCCAG
GTCAGCCAGTGAGACTCTGTCTCAATTGAATGAATGAATGAATGAATGAA
TGAAAATAATAAAAAACAAAGAAAAGAAAAGAGAAGGCTAAACATCCAAA
TTAGGTTCCTGCAATTGGAGTTGTTGACTGGTGTTTAAGCATCCCAAGCA
GTTTGGGAATTCTCTCTGGGGTTCTTCGGAAGATTCTGTTAATATCTGAA
TGAACAAGTTGTGGGAGTCAAAGGTGGTTTAGAGGAATAAATAGGCAAAG
CTATTTTTATCCTAAAGATGTTTAAATTTCTCATAAGCATTTCTGACCAA
CTTGTGAGTAGTTTATAGCTGTGTTTACAAGCTCTAGCTTTTGCCCAAGG
CTGAGCAGGTCACCATGCCAACACCTTCCTGTGCTCTTTGGAAGTCAGAG
AGTGGAGCTGTTAAATGAACTAGAACCAGTCATTGTGACTGACTACAGGT
TCTGTTGGGGGGGATTTCCTCCTGATTTTCTGGTTAGGTAATCTCATTCC
TGAAGNAAATATTTTCTCCTAAATTNCCGGCGNAGACCAGGTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_o20.b1 MSMg01no536_o20.b1 CHROMAT_FILE:
MSMg01no536_o20.b1 PHD_FILE: MSMg01no536_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:10 2005
         (570 letters)



>mm_chr13_30439524_30440494
          Length = 971

 Score =  957 bits (495), Expect = 0.0
 Identities = 549/567 (96%), Gaps = 3/567 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctttattttatcaaccaccacatatcaattcatttaagttaagacaaatgagaca 65
           |||||||| ||||||  ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 600 gaattcttcattttaaaaaccaccacatatcaatccatttgagttaagacaaatgagaca 541

                                                                       
Query: 66  cagctcttactccaaaaattctgagaccttactgaaagaaggacgacagtgatgtaggta 125
           ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 540 cagctcttactccaacaattctgagaccttactgaaaggaggacgacagtgatgtaggta 481

                                                                       
Query: 126 agcaagccaactgtcacatccacgtgttagtccttagctcaaggtgacataggtcccttc 185
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agtaagccaactgtcacatccacgtgttagtccttagctcaaggtgacataggtcccttc 421

                                                                       
Query: 186 acatcattaaaag-aattaagaatataacactagactaataaatgaaatatttagggata 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acatcattaaaagaaattaagaatataacactagactaataaatgaaatatttagggata 361

                                                                       
Query: 245 caagctaatatgaaaggcatgaaggagtctgtaacccagacccctaagaaaccatgaatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 caagctaatatgaaaggcatgaaggagtctgtaacccagacccctaagaaaccatgaatc 301

                                                                       
Query: 305 tcaaactgctttaaaatgcccaagttaaaaagagcatataactctcctttccctggccat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tcaaactgctttaaaatgcccaagttaaaaagagcatataactctcctttccctggccat 241

                                                                       
Query: 365 gaatgtccagtgtattctttaagactgtgtttcttcacagaagtggatgctcacagtcag 424
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaatgtccactgtattctttaagactgtgtttcttcacagaagtggatgctcacagtcag 181

                                                                       
Query: 425 ctattggatggatcacagggctcccaatggaggagctagagaaag-aacccaaggagcta 483
           |||| ||||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 180 ctataggatggaacacagggcccccaatggaggagctagagaaagtaa-ccaaggagcta 122

                                                                       
Query: 484 aagggatctgcaaccctataggtggaacaacattatgaactaaccagtaccctggagctc 543
           |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||
Sbjct: 121 aagggatctgcaaccctataggtaaaacaacattatgaactaaccagtaccccggagctc 62

                                      
Query: 544 ttgactctagctgcatatgtatcaaaa 570
           |||||||||||||||||||||||||||
Sbjct: 61  ttgactctagctgcatatgtatcaaaa 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space:   538160
Effective search space used:   538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no536_o20.g1 MSMg01no536_o20.g1 CHROMAT_FILE:
MSMg01no536_o20.g1 PHD_FILE: MSMg01no536_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:10 2005
         (520 letters)



>mm_chr13_30250943_30251862
          Length = 920

 Score =  967 bits (500), Expect = 0.0
 Identities = 515/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctagtctgttcttctcttcagaatcagtaaaatgtaaccgcattaagacggctaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctagtctgttcttctcttcagaatcagtaaaatgtaaccgcattaagacggctaggc 260

                                                                       
Query: 61  ctagggtagggtaggggactgcacacacctttgaaaactcagcaattcgggggcagagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagggtagggtaggggactgcacacacctttgaaaactcagcaattcgggggcagagga 320

                                                                       
Query: 121 aggacgatcaatattaccttgaggctagcctgatctacaccttgagttccaggtcagcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggacgatcaatattaccttgaggctagcctgatctacaccttgagttccaggtcagcca 380

                                                                       
Query: 181 gtgagactctgtctcaattgaatgaatgaatgaatgaatgaatgaaaataataaaaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gtgagactctgtctcaattgaatgaatgaatgaatgaatgaataaaaataataaaaaaca 440

                                                                       
Query: 241 aagaaaagaaaagagaaggctaaacatccaaattaggttcctgcaattggagttgttgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaaagaaaagagaaggctaaacatccaaattaggttcctgcaattggagttgttgac 500

                                                                       
Query: 301 tggtgtttaagcatcccaagcagtttgggaattctctctggggttcttcggaagattctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 tggtgtttaagcatcccaagcagtttgggaattctctctggggttcttcggaagattttg 560

                                                                       
Query: 361 ttaatatctgaatgaacaagttgtgggagtcaaaggtggtttagaggaataaataggcaa 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaatatctgaatgaacgagttgtgggagtcaaaggtggtttagaggaataaataggcaa 620

                                                                       
Query: 421 agctatttttatcctaaagatgtttaaatttctcataagcatttctgaccaacttgtgag 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 agctatttttatcctaaagatgtttaaatttgtcataagcatttctgaccaacttgtgag 680

                                                   
Query: 481 tagtttatagctgtgtttacaagctctagcttttgcccaa 520
           |||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 tagtttatagctgtgtttacaagctctagcttgtgcccaa 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)