Query= MSMg01no536_o20.b1 MSMg01no536_o20.b1 CHROMAT_FILE:
MSMg01no536_o20.b1 PHD_FILE: MSMg01no536_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:10 2005
(570 letters)
>mm_chr13_30439524_30440494
Length = 971
Score = 957 bits (495), Expect = 0.0
Identities = 549/567 (96%), Gaps = 3/567 (0%)
Strand = Plus / Minus
Query: 6 gaattctttattttatcaaccaccacatatcaattcatttaagttaagacaaatgagaca 65
|||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 600 gaattcttcattttaaaaaccaccacatatcaatccatttgagttaagacaaatgagaca 541
Query: 66 cagctcttactccaaaaattctgagaccttactgaaagaaggacgacagtgatgtaggta 125
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 540 cagctcttactccaacaattctgagaccttactgaaaggaggacgacagtgatgtaggta 481
Query: 126 agcaagccaactgtcacatccacgtgttagtccttagctcaaggtgacataggtcccttc 185
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agtaagccaactgtcacatccacgtgttagtccttagctcaaggtgacataggtcccttc 421
Query: 186 acatcattaaaag-aattaagaatataacactagactaataaatgaaatatttagggata 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acatcattaaaagaaattaagaatataacactagactaataaatgaaatatttagggata 361
Query: 245 caagctaatatgaaaggcatgaaggagtctgtaacccagacccctaagaaaccatgaatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 caagctaatatgaaaggcatgaaggagtctgtaacccagacccctaagaaaccatgaatc 301
Query: 305 tcaaactgctttaaaatgcccaagttaaaaagagcatataactctcctttccctggccat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tcaaactgctttaaaatgcccaagttaaaaagagcatataactctcctttccctggccat 241
Query: 365 gaatgtccagtgtattctttaagactgtgtttcttcacagaagtggatgctcacagtcag 424
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaatgtccactgtattctttaagactgtgtttcttcacagaagtggatgctcacagtcag 181
Query: 425 ctattggatggatcacagggctcccaatggaggagctagagaaag-aacccaaggagcta 483
|||| ||||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 180 ctataggatggaacacagggcccccaatggaggagctagagaaagtaa-ccaaggagcta 122
Query: 484 aagggatctgcaaccctataggtggaacaacattatgaactaaccagtaccctggagctc 543
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 121 aagggatctgcaaccctataggtaaaacaacattatgaactaaccagtaccccggagctc 62
Query: 544 ttgactctagctgcatatgtatcaaaa 570
|||||||||||||||||||||||||||
Sbjct: 61 ttgactctagctgcatatgtatcaaaa 35
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space: 538160
Effective search space used: 538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_o20.g1 MSMg01no536_o20.g1 CHROMAT_FILE:
MSMg01no536_o20.g1 PHD_FILE: MSMg01no536_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:10 2005
(520 letters)
>mm_chr13_30250943_30251862
Length = 920
Score = 967 bits (500), Expect = 0.0
Identities = 515/520 (99%)
Strand = Plus / Plus
Query: 1 tttctagtctgttcttctcttcagaatcagtaaaatgtaaccgcattaagacggctaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctagtctgttcttctcttcagaatcagtaaaatgtaaccgcattaagacggctaggc 260
Query: 61 ctagggtagggtaggggactgcacacacctttgaaaactcagcaattcgggggcagagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagggtagggtaggggactgcacacacctttgaaaactcagcaattcgggggcagagga 320
Query: 121 aggacgatcaatattaccttgaggctagcctgatctacaccttgagttccaggtcagcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggacgatcaatattaccttgaggctagcctgatctacaccttgagttccaggtcagcca 380
Query: 181 gtgagactctgtctcaattgaatgaatgaatgaatgaatgaatgaaaataataaaaaaca 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gtgagactctgtctcaattgaatgaatgaatgaatgaatgaataaaaataataaaaaaca 440
Query: 241 aagaaaagaaaagagaaggctaaacatccaaattaggttcctgcaattggagttgttgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaaagaaaagagaaggctaaacatccaaattaggttcctgcaattggagttgttgac 500
Query: 301 tggtgtttaagcatcccaagcagtttgggaattctctctggggttcttcggaagattctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 tggtgtttaagcatcccaagcagtttgggaattctctctggggttcttcggaagattttg 560
Query: 361 ttaatatctgaatgaacaagttgtgggagtcaaaggtggtttagaggaataaataggcaa 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaatatctgaatgaacgagttgtgggagtcaaaggtggtttagaggaataaataggcaa 620
Query: 421 agctatttttatcctaaagatgtttaaatttctcataagcatttctgaccaacttgtgag 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 agctatttttatcctaaagatgtttaaatttgtcataagcatttctgaccaacttgtgag 680
Query: 481 tagtttatagctgtgtttacaagctctagcttttgcccaa 520
|||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 tagtttatagctgtgtttacaagctctagcttgtgcccaa 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|