NNGGGCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTTTGATCTACAAGATGCAAAGTGGCAAACTCAGAAGC
ATTTCAAATGTATAATTAATGAAACTATATTTGCACTTCCTATACATAAA
CACGAATATATTTAAGCATGTGTGCAGTTCAATTCAAATTGTCCTGCAAA
ATAATACATGTAATCCTAGCTATAGGCATTGGTAAAATAGTTTACCTGAA
TGCACAATTTATGGTTCTAAGACAGCATTCTTTAATCTTTGGTATTACTT
ATAATTTATCATTTGTATAATAAGATTGTTTGACATCAGAAATGTAAATA
AAGAAAATAGCCAATAAAAAATAGCCAGAATGCATACAAACAAACAAACA
AAGAATGGTGTTTGATTAACCCCCACTTTCATTTTTCTAGGTGTGTGATT
GAAACAATTTTCTCACATATAACTTTTCTTCCATATAACATATATTGGCT
TCAGCAGAGCAAAGCCAGTGTGAACTGCTTGCTTCTTCTGATTAAATGAC
ATGCTGTAGACTCACCGGCATCTGTCGGGCTCCCTCCTTAGACACTGAAA
TAGTCAATGTAGATGTGTGGCAGGCAGTAAGGTATCTGTCAGAGAACCAC
CTGCCTGGTTTATATCGCACATCCTCCATCTAAGTAAAAAAACCAAAAAC
AAAAAACAAAAAATCAAAAAGACTGTCTTACTTAAGAC

NGGGCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGCGGAGAA
AGAGGAACACTCCTTCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAAATCAGTTTGGCGGTTCCTCAGAAAATTAGACATAATACTACCAG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACC
GGTAAGAAGAACACCTGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAAATGTTTTAATTTTATAGATTTCTGACTTTTT
TCAAAGTCCTTTTAGTATATATTTTTATATTTTTTATAAAATTATAAAAT
TGTAAAATTACAAATATTCACATAAACTATAATATAAATGGTATTAATTA
TAAAAATATAAAACATTTAAATTTTTTTAGAAATTTAAAAATTATAAAAA
TAATATACAAAATAATATATTACTGTATTCTTTATACTATATTATTGCAA
AAATATTTCATTGGTTTGGTTACACTTATTCCATGAGATT

Query= MSMg01no537_k14.b1 MSMg01no537_k14.b1 CHROMAT_FILE:
MSMg01no537_k14.b1 PHD_FILE: MSMg01no537_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:05 2005
         (685 letters)



>mm_chr13_27407861_27408952
          Length = 1092

 Score = 1207 bits (624), Expect = 0.0
 Identities = 670/688 (97%), Gaps = 7/688 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttttgatctacaagatgcaaagtggcaaactcagaagcatttcaaatgtataa 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gaattctttttgatcaataagatgcaaagtggcaaactcagaagcatttcaaatgtataa 833

                                                                       
Query: 65  ttaatgaaactatatttgcacttcctatacataaacacgaatatatttaagcatgtgtgc 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ttaatgaaactgtatttgcacttcctatacataaacacgaatatatttaagcatgtgtgc 773

                                                                       
Query: 125 agttcaattcaaattgtcctgcaaaataatacatgtaatcctagctataggcattggtaa 184
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 agttcagttcaaagtgtcctgcaaaataatacatgtaatcctagctataggcattggtaa 713

                                                                       
Query: 185 aatagtttacctgaatgcacaatttatggttctaagacagcattctttaatctttggtat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aatagtttacctgaatgcacaatttatggttctaagacagcattctttaatctttggtat 653

                                                                       
Query: 245 tacttataatttatcatttgtataataagattgtttgacatcagaaatgtaaataaagaa 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tacttataatttatcatctgtataataagattgtttgacatcagaaatgtaaataaagaa 593

                                                                       
Query: 305 aatagccaataaaaaatagccagaatgcatacaaacaaacaaacaaa----gaatggtgt 360
           |||||||||||||||||| ||||||||||||||||||||||||||||    |||||||||
Sbjct: 592 aatagccaataaaaaataaccagaatgcatacaaacaaacaaacaaacaaagaatggtgt 533

                                                                       
Query: 361 ttgattaacccccactttcatttttctaggtgtgtgattgaaacaattttctcacatata 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttgattaacctccactttcatttttctaggtgtgtgattgaaacaattttctcacatata 473

                                                                       
Query: 421 actttt-cttccatataacatatattggcttcagcagagcaaagccagtgtgaactgctt 479
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 actttttcttccatataacatatattggcttcagcagagcaaagccagtgtgaactgctt 413

                                                                       
Query: 480 gcttcttctgattaaatgacatgctgtagactcaccggcatctgtcgggctccctcctta 539
           ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcttcctctgattaaaggacatgctgtagactcaccggcatctgtcgggctccctcctta 353

                                                                       
Query: 540 gacactgaaatagtcaatgtagatgtgtggcaggcagtaaggtatctgtcagagaaccac 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gacactgaaatagtcaatgtagatgtgtggcaggcagtaaggtatctgtcagagaaccac 293

                                                                       
Query: 600 ctgcctggtttatatcgcacatcctccatctaagtaaaaaaa--ccaaaaacaaaaaaca 657
           ||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||
Sbjct: 292 ctgcctggtttatatcgcacatcctccatctaagtaaaaaaaaacaaaaaacaaaaaaca 233

                                       
Query: 658 aaaaatcaaaaagactgtcttacttaag 685
           ||||||||||||||||||||||||||||
Sbjct: 232 aaaaatcaaaaagactgtcttacttaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1092
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1082
Effective search space:   730350
Effective search space used:   730350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)