Query= MSMg01no537_m05.b1 MSMg01no537_m05.b1 CHROMAT_FILE:
MSMg01no537_m05.b1 PHD_FILE: MSMg01no537_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:13 2005
(559 letters)
>mm_chr13_110172339_110173297
Length = 959
Score = 938 bits (485), Expect = 0.0
Identities = 497/501 (99%)
Strand = Plus / Minus
Query: 59 ggaatgaggaagagatggcgcagtatttcagaactcttgctgctctgccaaaggacctga 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 ggaatgaggaagagatggcgcagtatttcagaactcttgctgctctgccaaaggacctga 900
Query: 119 gtgttgtttccaacactcaatcaagtagcttgcaactgcctctaagtccagagccagaga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 gtgttgtttccaacactcaatcaagtagcttgcaactgcctctaagtccagagccagaga 840
Query: 179 atatactctccccttctggcttctgtgagtagccacactcatgcacactcatatagacac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 atatactctccccttctggcttctgtgagtagccacactcatgcacactcatatagacac 780
Query: 239 acatacagaaaaatttttatacaaacctttataagcaatgaattgagcaagagataacca 298
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 acatacagaaaaatttaaaaacaaacctttataagcaatgaattgagcaagagataacca 720
Query: 299 agtcaattgaaagtagacaaggcctagagtcagagaattgccatctccctacaacgataa 358
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 agttaattgaaagtagacaaggcctagagtcagagaattgccatctccctacaacgataa 660
Query: 359 gtcattaaaatagaaataattcaagatataatatttgacatttattcatttattaaacaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gtcattaaaatagaaataattcaagatataatatttgacatttattcatttattaaacaa 600
Query: 419 cataaccaaagatttaggtagtaatataattaacataatcgcaaaagttggagtaggttt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cataaccaaagatttaggtagtaatataattaacataatcgcaaaagttggagtaggttt 540
Query: 479 agaaaagaaatgttactatgttattttttgaaaatgttgaacaaattatatagatataga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agaaaagaaatgttactatgttattttttgaaaatgttgaacaaattatatagatataga 480
Query: 539 tttagatatagatcattgcac 559
|||||||||||||||||||||
Sbjct: 479 tttagatatagatcattgcac 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_m05.g1 MSMg01no537_m05.g1 CHROMAT_FILE:
MSMg01no537_m05.g1 PHD_FILE: MSMg01no537_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:13 2005
(512 letters)
>mm_chr13_109960778_109961689
Length = 912
Score = 731 bits (378), Expect = 0.0
Identities = 412/442 (93%), Gaps = 29/442 (6%)
Strand = Plus / Plus
Query: 1 aggagctgcccaagagtgtgtctgaaggctaaataataggtagaagaccaaaattaacct 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aggagctgcccaagagtgtgtctgaaggctaaataacaggtagaagaccaaaattaacct 260
Query: 61 tttcacccatttccttatatctagaaatccaggcaagtaaaattccagttaacccagggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcacccatttccttatatctagaaatccaggcaagtaaaattccagttaacccagggc 320
Query: 121 taattacaaacagtatgcaaatgacccaaactttcagtgatcagtcaaactccctgtatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattacaaacagtatgcaaatgacccaaactttcagtgatcagtcaaactccctgtatg 380
Query: 181 gcatagatgtttaatcaattatgattgtcagtattcactggatgtaagctgacagggagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatagatgtttaatcaattatgattgtcagtattcactggatgtaagctgacagggagg 440
Query: 241 aaaagatgactggctggtggagagatggctcaggaattaaagagtactaagtgtcatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaagatgactggctggtggagagatggctcaggaattaaagagtactaagtgtcatgaa 500
Query: 301 gacttgaagaaaacctggcaccctcatctggtcttcataggtagcagacatgcccatggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacttgaagaaaacctggcaccctcatctggtcttcataggtagcagacatgcccatggc 560
Query: 361 acaa-----------------------------acacagagagagagagagagagagaga 391
|||| |||||||||||||||||||||||||||
Sbjct: 561 acaatacaaacacacacacacacacacacacacacacagagagagagagagagagagaga 620
Query: 392 gagagagagagagagagagaga 413
||||||||||||||||||||||
Sbjct: 621 gagagagagagagagagagaga 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 147
Number of extensions: 62
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
