BAC Information

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BAC

Clone NameMSMg01-537O11
Chromosome13 (Build37)
Map Location 64,369,922 - 64,531,197
singlet/doubletdoublet
Overlap geneCdc14b, 1110018J18Rik, Ctsl
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4
Downstream geneCcrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537O11.T7 (MSMg01no537_o11.b1)MSMg01-537O11.TJ (MSMg01no537_o11.g1)
ACCAG604762AG604763
length740743
length of high quality
(start - end)		510 (77 - 586)575 (82 - 656)
definitionCHROMAT_FILE: MSMg01no537_o11.b1 PHD_FILE: MSMg01no537_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:24 2005CHROMAT_FILE: MSMg01no537_o11.g1 PHD_FILE: MSMg01no537_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,369,922 - 64,370,431)(64,530,623 - 64,531,197)
sequence
NGGGTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAGTGTTTCTTTGGCTGAGCTCTCTCCAATATCATTTA
TAAACACAGAACATAGCCGATGACCGCTGGCTGGTGATTCCCTGACTTTA
GGGCTGGTCCTGCACCACTCCCTCCTCACCTATTTGCCACTATAAAGCCA
TAAAAGAAATAGCATTTGAGGCTTAACTTCTTTGCCTATGTGCGGTGGAA
CTGCCAGAGCTAGAAGATGCATTAGAGCTAGGAAGCAGAGAAATCAAGAC
GGGTTCAGGATGCAGCAAAGGTAAGAGTGCACAGGCACATTGCAGGTGCA
AAGACAAACGGACACGTCGAGGAGATTCTCCTCCGCTACAACAAGAGCAA
TGGAAATGGATTTACTTTGTCCTCTGTGTTCTGTGTCACACAGTATTTCC
TCTTCTATCCAGAAAAATACACTCCCACAGGGCAAACAATGAATACACAA
AAGAATTTTACATAGTAAGCATTCAATAAACACTTCTTGAATTAATGAAT
AAACGTCCCTAGCCAATGGCATCTGCTGTGAATTTTAAAGATCCTAAAAG
GAAAGGGGAGAGGGGAGAGGGGAGTGCTGCTTTGGTTGCTCTCATTTGTC
TGAGGAGCCTGTGCTGCCCATAAGACACCCAGTGCTTGGAAATGACTAAC
ATGACCCCAACTAGAGATTATCCTGTAAGTTAATTATGAC

NNCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGAAAGAAGGGAAATCA
GTTTTCTCCAGGGAGAAGTCCCCTAATAGGCTATCCAGTCCAATTGGTCA
CTCCTATACATATAAGCAAAACTAAATGAGTTTGTGTGTGTGTGTGCGTG
TGCGCACGCTCATGTACATATGTGTATATGTGTAACAATAATAATTAAAG
AAGAGGTCATGAATTTAAGAGGGAGTAAGAGGAGACAGAAGAAATTGGAG
ATGAAATGATGTAAATACAGTACTCATTGTATGAAACTGTCAAAAAAACA
AACAAAAAATACATTTAATTAAAAGAAGAAAAAAAAAAGTACTGTCCTGA
CTGGCAGTAGAGATCAGAGAAAGGCAAGGTGTTCTGCTGACACCTAGTGT
CTGAAGCATGGAAGGCCTAAGCAGACAGAACTCAGAACAGCGTTTATCAC
CTGCCTGTTCCTTAGTCATTCTGCTTTGTTTCTTTATATGAGAGAGAGAG
AGAGAAAAACACAGAGAGAGAAACACAGAGAGAGAAAAACACAGAGAGAT
AAACAGAGAGAAAAACAGAGAGAGAAACAGAGAGAGAGAAACAGAGAGAG
ACAGAGAATGAGAGACAGAGAGAAACAGAGACTGAGACTGAGAATGAGAG
AGAGACTGAGAGAGAGACCGAGAATGAGAGAGACAGACTGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_o11.b1 MSMg01no537_o11.b1 CHROMAT_FILE:
MSMg01no537_o11.b1 PHD_FILE: MSMg01no537_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:24 2005
         (510 letters)



>mm_chr13_64369722_64370631
          Length = 910

 Score =  986 bits (510), Expect = 0.0
 Identities = 510/510 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagctctctccaatatcatttataaacacagaacatagccgatgaccgctggctggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgagctctctccaatatcatttataaacacagaacatagccgatgaccgctggctggtg 260

                                                                       
Query: 61  attccctgactttagggctggtcctgcaccactccctcctcacctatttgccactataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attccctgactttagggctggtcctgcaccactccctcctcacctatttgccactataaa 320

                                                                       
Query: 121 gccataaaagaaatagcatttgaggcttaacttctttgcctatgtgcggtggaactgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccataaaagaaatagcatttgaggcttaacttctttgcctatgtgcggtggaactgcca 380

                                                                       
Query: 181 gagctagaagatgcattagagctaggaagcagagaaatcaagacgggttcaggatgcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagctagaagatgcattagagctaggaagcagagaaatcaagacgggttcaggatgcagc 440

                                                                       
Query: 241 aaaggtaagagtgcacaggcacattgcaggtgcaaagacaaacggacacgtcgaggagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaggtaagagtgcacaggcacattgcaggtgcaaagacaaacggacacgtcgaggagat 500

                                                                       
Query: 301 tctcctccgctacaacaagagcaatggaaatggatttactttgtcctctgtgttctgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcctccgctacaacaagagcaatggaaatggatttactttgtcctctgtgttctgtgt 560

                                                                       
Query: 361 cacacagtatttcctcttctatccagaaaaatacactcccacagggcaaacaatgaatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacacagtatttcctcttctatccagaaaaatacactcccacagggcaaacaatgaatac 620

                                                                       
Query: 421 acaaaagaattttacatagtaagcattcaataaacacttcttgaattaatgaataaacgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaaaagaattttacatagtaagcattcaataaacacttcttgaattaatgaataaacgt 680

                                         
Query: 481 ccctagccaatggcatctgctgtgaatttt 510
           ||||||||||||||||||||||||||||||
Sbjct: 681 ccctagccaatggcatctgctgtgaatttt 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_o11.g1 MSMg01no537_o11.g1 CHROMAT_FILE:
MSMg01no537_o11.g1 PHD_FILE: MSMg01no537_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:24 2005
         (575 letters)



>mm_chr13_64530321_64531295
          Length = 975

 Score = 1112 bits (575), Expect = 0.0
 Identities = 575/575 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagaaagaagggaaatcagttttctccagggagaagtcccctaataggctatccagtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 taagaaagaagggaaatcagttttctccagggagaagtcccctaataggctatccagtcc 818

                                                                       
Query: 61  aattggtcactcctatacatataagcaaaactaaatgagtttgtgtgtgtgtgtgcgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 aattggtcactcctatacatataagcaaaactaaatgagtttgtgtgtgtgtgtgcgtgt 758

                                                                       
Query: 121 gcgcacgctcatgtacatatgtgtatatgtgtaacaataataattaaagaagaggtcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gcgcacgctcatgtacatatgtgtatatgtgtaacaataataattaaagaagaggtcatg 698

                                                                       
Query: 181 aatttaagagggagtaagaggagacagaagaaattggagatgaaatgatgtaaatacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aatttaagagggagtaagaggagacagaagaaattggagatgaaatgatgtaaatacagt 638

                                                                       
Query: 241 actcattgtatgaaactgtcaaaaaaacaaacaaaaaatacatttaattaaaagaagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 actcattgtatgaaactgtcaaaaaaacaaacaaaaaatacatttaattaaaagaagaaa 578

                                                                       
Query: 301 aaaaaaagtactgtcctgactggcagtagagatcagagaaaggcaaggtgttctgctgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaaaaaagtactgtcctgactggcagtagagatcagagaaaggcaaggtgttctgctgac 518

                                                                       
Query: 361 acctagtgtctgaagcatggaaggcctaagcagacagaactcagaacagcgtttatcacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 acctagtgtctgaagcatggaaggcctaagcagacagaactcagaacagcgtttatcacc 458

                                                                       
Query: 421 tgcctgttccttagtcattctgctttgtttctttatatgagagagagagagagaaaaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgcctgttccttagtcattctgctttgtttctttatatgagagagagagagagaaaaaca 398

                                                                       
Query: 481 cagagagagaaacacagagagagaaaaacacagagagataaacagagagaaaaacagaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cagagagagaaacacagagagagaaaaacacagagagataaacagagagaaaaacagaga 338

                                              
Query: 541 gagaaacagagagagagaaacagagagagacagag 575
           |||||||||||||||||||||||||||||||||||
Sbjct: 337 gagaaacagagagagagaaacagagagagacagag 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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