Query= MSMg01no538_g08.b1 MSMg01no538_g08.b1 CHROMAT_FILE:
MSMg01no538_g08.b1 PHD_FILE: MSMg01no538_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:02 2005
(531 letters)
>mm_chr13_111259181_111260112
Length = 932
Score = 888 bits (459), Expect = 0.0
Identities = 511/535 (95%), Gaps = 17/535 (3%)
Strand = Plus / Plus
Query: 4 ggaattcccttgttctgaggatac-tctgtaatggaggtagaagaagggacaacccagtt 62
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccttggtctgaggatacatctgtaatggaggtagaagaagggacaacccagtt 263
Query: 63 gctgggtcacagccattctagagccctatcagcaattacattactcacatgttggtggtt 122
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctgggtcacagccattgttgagccctatcagcaattacattactcacatgttggtggtt 323
Query: 123 ggaggagggtatagagaataacccagatggcttgtcttatattctctccttcatatcttg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaggagggtatagagaataacccagatggcttgtcttatattctctccttcatatcttg 383
Query: 183 tacattgcccacttgtccattttgaccctaactttttcagaccttccaaaatcctcaata 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacattgcccacttgtccattttgaccctaactttttcagaccttccaaaatcctcaata 443
Query: 243 atataagtagcagtaatcttgattaataattatcttctctttttctcttttatccatgca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atataagtagcagtaatcttgattaataattatcttctctttttctcttttatccatgca 503
Query: 303 tctgtgcatcttctatctatccatctatcatctgtccatctatcattcacccatcatcca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctgtgcatcttctatctatccatctatcatctgtccatctatcattcacccatcatcca 563
Query: 363 tccaccatttttctatccacccatccatcattcacctatccatcatccactcatcgatca 422
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tccaccatttt-ctatccacccatccatcattcacctatccatcatccactcatcgatca 622
Query: 423 tccatccaacattcatcaacccatcca--------cccacccgcccacccatccatccat 474
||||||||||||||||||||||||||| ||||||| |||||||||| ||||||
Sbjct: 623 tccatccaacattcatcaacccatccatccatccacccacccacccacccatcaatccat 682
Query: 475 cc-atcc-atccatccatcca----tccatccatcccatcc-atccacccatcca 522
|| |||| ||||| ||| ||| |||||||||||||||| |||||||||||||
Sbjct: 683 cccatcccatccacccacccacccatccatccatcccatcccatccacccatcca 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space: 480362
Effective search space used: 480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_g08.g1 MSMg01no538_g08.g1 CHROMAT_FILE:
MSMg01no538_g08.g1 PHD_FILE: MSMg01no538_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:02 2005
(406 letters)
>mm_chr13_111422113_111422921
Length = 809
Score = 630 bits (326), Expect = 0.0
Identities = 346/354 (97%), Gaps = 3/354 (0%)
Strand = Plus / Minus
Query: 1 tgattcacgtccctccacagtgggatcaattgctaatgtacaatgtgcatctgattctcc 60
||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 530 tgattcaagtccctccacagtggggtcaattgctaatgtacaatgtacatctgattctcc 471
Query: 61 atactggctccgtactggccga---accattgataaatatgacaccccaaattctgatcc 117
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 470 atactggctccgtactggccgaaccaccattgataaatatgacaccccaaattctgatcc 411
Query: 118 tgtcagcacaagatctcagaagtcaatttgaacaaactatagaatttttcagttaagtgg 177
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 410 tgtcagcacaagatctcagaagtcgatttgaacaaactatagaatttttcagttaagtgg 351
Query: 178 gcattggtagcaaataatcccctcactgggatggtttgtttcttgtttgtggtacatgtg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gcattggtagcaaataatcccctcactgggatggtttgtttcttgtttgtggtacatgtg 291
Query: 238 ctttgaaacagaccagtgttatgtactggggaagaggaatcatccaagctatgcagatag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctttgaaacagaccagtgttatgtactggggaagaggaatcatccaagctatgcagatag 231
Query: 298 acaggggctctattatctgaagacactcctatctctctctctctctctctctct 351
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 230 acaggggctctattatctgaagacactcctctctctctctctctctctctctct 177
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 809
Length adjustment: 9
Effective length of query: 397
Effective length of database: 800
Effective search space: 317600
Effective search space used: 317600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
