BAC Information

Click to search

BAC

Clone NameMSMg01-538L17
Chromosome13 (Build37)
Map Location 64,591,857 - 64,592,364
singlet/doubletsinglet
Overlap gene1190003K10Rik
Upstream genePtch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612
Downstream geneLOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538L17.T7 (MSMg01no538_l17.b1)MSMg01-538L17.TJ (MSMg01no538_l17.g1)
ACCAG605391AG605392
length738741
length of high quality
(start - end)		687 (38 - 724)508 (71 - 578)
definitionCHROMAT_FILE: MSMg01no538_l17.b1 PHD_FILE: MSMg01no538_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:27 2005CHROMAT_FILE: MSMg01no538_l17.g1 PHD_FILE: MSMg01no538_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
TGTTATTGGGTTACTTCACTCAGGATGATACCCTCCTGGTCCATCCATTT
GCCTAGAAATTTCATAAATTCATTTTTTAATAGCTGAGTAGTACTCCATT
GTGAAAATGTACCACATTTTTCTGTATCCATTCCTCTGTTGAGGGGCATT
TAGGTTCTTTCCAGCTTCTGGCTATTTTAAATAAGGCTGCTATGAACATA
GTAGAGCATGTGGCTTTCTTACCAGTTGTAAAATCTTCTGGATATATGCC
CAAGAGAGGTATTTCGGGATCCTCCAGTAGTATTATGTCTAATTTCTTTC
TCAGTCTGTTTATTCTTTGTGTAGAAAAAGGCCATTGACTTGTTTGAATT
AATTTTATATCCAGCTAATTCACTGAAGCTGTTTATCAGGTTTAGGAGTT
CTCTGGTGGAATTTTTAGGGTCACTTATATAAACTATCATATCATCTGCA
AAAAGTGATATTTTGACTTCTTCCTTTCCAATTTGTATCCCCTTGATCTC
CTTTTGTTGTTGAATTGCTCTGGCTAGGACTTCAAGTACAGTGTTGAATA
GGTAGGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTTAGTGGGATT
GCTTCCAGCTTCTCACCATTTACTTTGATGTTGGCTGTTGGCTACTGGGT
TGCTGTAGATTGCTTTTATCATGTTTAGGTATGGGCCT

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTTGTGAAATAGACGCTAGGGGTCTGAAG
TTTAAGATCGTCCTTCACCACAGAGCATGTCTGAAGTCAGCATGAGGTAC
TTGATTTTGTATCAAAAAGGAAAAAGAAGAAAAAGAATTGATAGCAATTT
CAAGAAAATATAAACCCAAGGCAGGAAACAGGTCTCAAATGGGTTCATTT
TGATTTCCCCGGGGAGCTGATGAGCACCCTCAGCTGTGACTTGCTGTCTC
TGCACCTACCCCAGTGCGGACAGAAAATCATCAAGCATACACGTACATCT
CTGCACTCCTGTGACAATGCAAAGGCACTGCATGGTCCACCTGCTTCCTC
TGGGGGTTGGGAAGATGGGAAAGCCTCTGTGACCTCAGTGGAAGGACCAG
CAGTGTTTCAATAGCTCGGAAATGAGAAACATGAAGCTACGCGTAGAAGT
GCAAACCTTTGGAGGCTGTCTCTCCTGAGCTACTGAACTAATATTAAGCT
CTGATGTTTTGTGAGAGGAATTTTCACCTCACGTGTCTCTGCTCTTCTCT
TGGCTCAAAAGAAAAAAAATCCAATTTCAGGATTTTTACCTCTCTACCTA
AGAGTTTCAGCTTGTAGATTTTGTCCTCAGGTGTGTGCAGTTGGAAGGGA
GTGGCCTCTTTTTTAAAAAATTTTATTAGATATTTTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_l17.g1 MSMg01no538_l17.g1 CHROMAT_FILE:
MSMg01no538_l17.g1 PHD_FILE: MSMg01no538_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:27 2005
         (508 letters)



>mm_chr13_64591657_64592564
          Length = 908

 Score =  982 bits (508), Expect = 0.0
 Identities = 508/508 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttgtgaaatagacgctaggggtctgaagtttaagatcgtccttcaccacagagcatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttgtgaaatagacgctaggggtctgaagtttaagatcgtccttcaccacagagcatgt 260

                                                                       
Query: 61  ctgaagtcagcatgaggtacttgattttgtatcaaaaaggaaaaagaagaaaaagaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaagtcagcatgaggtacttgattttgtatcaaaaaggaaaaagaagaaaaagaattg 320

                                                                       
Query: 121 atagcaatttcaagaaaatataaacccaaggcaggaaacaggtctcaaatgggttcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagcaatttcaagaaaatataaacccaaggcaggaaacaggtctcaaatgggttcattt 380

                                                                       
Query: 181 tgatttccccggggagctgatgagcaccctcagctgtgacttgctgtctctgcacctacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatttccccggggagctgatgagcaccctcagctgtgacttgctgtctctgcacctacc 440

                                                                       
Query: 241 ccagtgcggacagaaaatcatcaagcatacacgtacatctctgcactcctgtgacaatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagtgcggacagaaaatcatcaagcatacacgtacatctctgcactcctgtgacaatgc 500

                                                                       
Query: 301 aaaggcactgcatggtccacctgcttcctctgggggttgggaagatgggaaagcctctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaggcactgcatggtccacctgcttcctctgggggttgggaagatgggaaagcctctgt 560

                                                                       
Query: 361 gacctcagtggaaggaccagcagtgtttcaatagctcggaaatgagaaacatgaagctac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacctcagtggaaggaccagcagtgtttcaatagctcggaaatgagaaacatgaagctac 620

                                                                       
Query: 421 gcgtagaagtgcaaacctttggaggctgtctctcctgagctactgaactaatattaagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcgtagaagtgcaaacctttggaggctgtctctcctgagctactgaactaatattaagct 680

                                       
Query: 481 ctgatgttttgtgagaggaattttcacc 508
           ||||||||||||||||||||||||||||
Sbjct: 681 ctgatgttttgtgagaggaattttcacc 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |