Query= MSMg01no539_h18.b1 MSMg01no539_h18.b1 CHROMAT_FILE:
MSMg01no539_h18.b1 PHD_FILE: MSMg01no539_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:27 2005
(630 letters)
>mm_chr13_19384393_19385422
Length = 1030
Score = 1104 bits (571), Expect = 0.0
Identities = 613/627 (97%), Gaps = 1/627 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgtaatctacttggtgaagctctttgtcattgttctttacttgattaagcttt 63
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtaatctaatgggtgaagctctttgtcattgttctttacttgattaagcttt 263
Query: 64 tacaaaaatcacaccttaggtgtttattttttatgggcatcagaataaatacaaatactc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacaaaaatcacaccttaggtgtttattttttatgggcatcagaataaatacaaatactc 323
Query: 124 cgcttccactagctcactcactccttgttttttcatctaatccacaagcaaataatggaa 183
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 cgcttccactagctcactcactccttgttttttcatctactccacaagcaaataatggaa 383
Query: 184 aactaaccataggatgtggagaaagagtactccagtgtcccccattgctggtaggattgc 243
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 384 aactaaccataggatgtggagaaagagtactctagtgtcccccattgctggtaggattgc 443
Query: 244 aaactggtaccactctggaaatcaatctggtggttccacagaaaattggaaaaatatcta 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 aaactggtaccactctggaaatcaatctgggggttccacagaaaattggaaaaatatcta 503
Query: 304 tctgaagaaccagctataccactcttggtcatatacccaaaagatgccccaccatgtcac 363
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 504 tctgaagaaccagctataccactcttagtcatatacccaaaagatgccccaccatgtcac 563
Query: 364 aggggcacatgttccactatattcatagcggccttgtttgtgatagccaaaagctggaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aggggcacatgttccactatattcatagcggccttgtttgtgatagccaaaagctggaaa 623
Query: 424 caacccagaaacaattcctaatagaaaacaagtcaggaaaggttgtgagacaagaggaca 483
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 624 caacccagaaacaattcctaatagaaaacaagtcagggaaggttgtgagacaagaggaca 683
Query: 484 caagggggcgctactgtgcagcaatggaaggcttctccctctgacctcccaggagagagg 543
||||||| ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||
Sbjct: 684 caagggg-cgctactgtgcagcaatgggaggcttctctctctgacttcccaggagagagg 742
Query: 544 gtgcctgaaggagacaatgatgcagctgagactacagatgaagtggagttagccaggaag 603
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 743 gtgcctggaggagacaatgatgcagctgagactacagaggaagtggagttagccaggaag 802
Query: 604 actgggttatgcagcgcttgcctagga 630
|||||||||||||| ||||||||||||
Sbjct: 803 actgggttatgcagtgcttgcctagga 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_h18.g1 MSMg01no539_h18.g1 CHROMAT_FILE:
MSMg01no539_h18.g1 PHD_FILE: MSMg01no539_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:27 2005
(680 letters)
>mm_chr13_19562500_19563579
Length = 1080
Score = 1251 bits (647), Expect = 0.0
Identities = 673/683 (98%), Gaps = 3/683 (0%)
Strand = Plus / Minus
Query: 1 atgatattcatcatctacatctggcgagcttttcatggacttgcccatctgtctgattct 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 atgatatccatcatctacatctggcgagcttttcatggacttgcccatctgtctgattct 930
Query: 61 gttatcactgatgctgcttctgtgacattgatacaggggatttaatctagaccatcttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gttatcactgatgctgcttctgtgacattgatacaggggatttaatctagaccatcttgc 870
Query: 121 atactagaaaactgttttcccattgaactatacccccagtcatttttaaagctttttatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 atactagaaaactgttttcccattgaactatacccccagtcatttttaaagctttttatt 810
Query: 181 ccaagacagaaactcactaaatttccaaggcttccatgtcctaacttaaccatgcctcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ccaagacagaaactcactaaatttccaaggcttccatgtcctaacttaaccatgcctcag 750
Query: 241 cctcctgagtagctgggctaacaggccaatgctaaagggcctggttgccttcagtttatc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 cctccggagtagctgggctaacaggccaatgctaaagggcctggttgccttcagtttatc 690
Query: 301 catgcatcatttgactagcctccagagactatgcaggtgttgagcgtaacaaataaaaat 360
|||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 689 catgcatcatttgagtagcctccagagactacgcaggtgttgagtgtaacaaataaaaat 630
Query: 361 gttcctgaagaatggggtctcattgaggaaacactacaccagttaggctaatggcagtta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gttcctgaagaatggggtctcattgaggaaacactacaccagttaggctaatggcagtta 570
Query: 421 aaagtatatctgtttaataaggaccaaaagttacaaagtaattgcagcacaaggcatgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaagtatatctgtttaataaggaccaaaagttacaaagtaattgcagcacaaggcatgta 510
Query: 481 aatgcagatgctagaagaactgcaaataaaataaagtaaaataa---aataatataaaca 537
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 509 aatgcagatgctagaagaactgcaaataaaataaagtaaaataacaaaataatataaaca 450
Query: 538 tgccccacagcattttaaaatattttaataagagcttcccaattactatgactagataaa 597
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 449 tgccccacagcattttaaaatattttaatgagagcttcccaattgctatgactagataaa 390
Query: 598 cacttgctacatgtgttgctggtttattctcaaaagagccctgttgtttccactgaagga 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cacttgctacatgtgttgctggtttattctcaaaagagccctgttgtttccactgaagga 330
Query: 658 tgaaggaaactgaaactccctgt 680
|||||||||||||||||||||||
Sbjct: 329 tgaaggaaactgaaactccctgt 307
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
