NTTTTAATATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTGATCTTTCCAGACTTTTTATCATGAATGGGTGTTG
GAGTTTTCAAATTCTTTCTCTGCATCTAACAAGATGATCATGTGGTTTTT
GTCTTTGAGTTTGTTTATATAATGGATTACGTTGATGGATTTCCATATAT
TAAACCATCCCTGCATCCCTGGAATGAAACTTACTTGGTCAGCATGGATG
ATTGTCTTGATGTGTTCTTGGCTTCGGTTAGTGAGAATTTTATTGAGTAT
GTTTACATCTACATTCATAAGGGAAATTTATCTGAAGTTGTCTATCTCTG
TTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAAT
GAACTAGGTAGGGTACTTTCTGCTTGTATTTTTTGGAATAATTTGTGAAG
AACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACC
CATCTGGTCCTGGGCATTTTTTGGTTGGGAGACTATTAATGACTGCTTCT
ATTTCTTTACGGGATATAGGACTGTTTAGATCATTAACCTGATCTTGATT
TAACTTTGGTACCTGGTATCTGTCTAGAAACTTGTCCATTTCATCCAGGT
TTTCCAGTTTTTTAAAATTTTTTTGAGTATAGCCTTTTGTAGAAAGACCT
GATGTNGATCTGGATTACTTCCGAATCTGTTGTTAGGTCTCCTTTTCATT

NTTTTTGTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCTAATTATGTAT
GGGAGCAATAGGCTTAAGATAGTAGTCTCATATTTTGAAGGTTACTTCAT
AATTTTTTTCTTATATGATGTATTCATGGTATATTTAAATTTAAATATAG
AAAAAAACCCAGACTTGTTTTCTATAATATGTATCATAGCCACATAGCCT
AATTAAGAAAAATAAAAGTAAATCATTCCAGCATCATTCACCAGAGGCAT
ATTTTATGGTTTCTTTACATATGGGATGTACTCAACTGTCTGGTAACTCT
CAGTTTCCAAATGGTCTCTATTACAGGCACTAAATTATTTAATGGAAAGC
CTATGGCTTTGGTGAAGTTTCTGATTTTCTGGTAGTCTTTTATTTAGTGA
TCTCATAAACTGGTAAAATAGTGAAACTGGTAATAAAACACTAGATAGGT
GATTACTAGGCACTAGGGGTAAAGGAATGTAGACATAATGGTTAAAGGAA
GCAGACTTTTAATTACCAGAGAAGTTAGTTCTGGTTAGATATGCTATACA
ATGACAACACTATCTTATATACACAAACTTTGCTAGGAGAGTAGCTCTGA
AGTGTTCTCCCCACAGAGAACAGTGGAGAATGTATGGAGGAAATATGTTA
ATTGATTGAGGGTGGTAACCCTCTAACAAAGTTGTAAAA

Query= MSMg01no539_j13.g1 MSMg01no539_j13.g1 CHROMAT_FILE:
MSMg01no539_j13.g1 PHD_FILE: MSMg01no539_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:36 2005
         (556 letters)



>mm_chr13_8349303_8350258
          Length = 956

 Score = 1044 bits (540), Expect = 0.0
 Identities = 552/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctaattatgtatgggagcaataggcttaagatagtagtctcatattttgaaggtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 aattctaattatgtatgggagcaataggcttaagatagtagtctcatattttgaaggtta 643

                                                                       
Query: 61  cttcataatttttttcttatatgatgtattcatggtatatttaaatttaaatatagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cttcataatttttttcttatatgatgtattcatggtatatttaaatttaaatatagaaaa 583

                                                                       
Query: 121 aaacccagacttgttttctataatatgtatcatagccacatagcctaattaagaaaaata 180
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 582 caacccagacttgttttctataatatgtatcatagtcacatagcctaattaagaaaaata 523

                                                                       
Query: 181 aaagtaaatcattccagcatcattcaccagaggcatattttatggtttctttacatatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aaagtaaatcattccagcatcattcaccagaggcatattttatggtttctttacatatgg 463

                                                                       
Query: 241 gatgtactcaactgtctggtaactctcagtttccaaatggtctctattacaggcactaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gatgtactcaactgtctggtaactctcagtttccaaatggtctctattacaggcactaaa 403

                                                                       
Query: 301 ttatttaatggaaagcctatggctttggtgaagtttctgattttctggtagtcttttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttatttaatggaaagcctatggctttggtgaagtttctgattttctggtagtcttttatt 343

                                                                       
Query: 361 tagtgatctcataaactggtaaaatagtgaaactggtaataaaacactagataggtgatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tagtgatctcataaactggtaaaatagtgaaactggtaataaaacactagataggtgatt 283

                                                                       
Query: 421 actaggcactaggggtaaaggaatgtagacataatggttaaaggaagcagacttttaatt 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 282 actaggcactaggggtaaaggaatgtaaacataatggttaaaggaagcagacttttaatt 223

                                                                       
Query: 481 accagagaagttagttctggttagatatgctatacaatgacaacactatcttatatacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 accagagaagttagttctggttagatatgctatacaatgacaacactatcttatatacac 163

                           
Query: 541 aaactttgctaggaga 556
            |||||||||||||||
Sbjct: 162 gaactttgctaggaga 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)