Query= MSMg01no539_p16.b1 MSMg01no539_p16.b1 CHROMAT_FILE:
MSMg01no539_p16.b1 PHD_FILE: MSMg01no539_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:06 2005
(613 letters)
>mm_chr13_72930355_72931362
Length = 1008
Score = 946 bits (489), Expect = 0.0
Identities = 528/549 (96%), Gaps = 16/549 (2%)
Strand = Plus / Minus
Query: 4 ggaattcccaggatctgctatccctaggtttcctctccatctactttcctccttcctggg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ggaattcccaggatctgctatccctaggtttcctctccatctactttcctccttcctggg 475
Query: 64 tctcctctccccagattgcttgccccaggttgcctgttcctttttgtcacttcctgactc 123
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 474 tctcctgtccccagattgcttgccccaggttgcctgttccttattgtcacttcctgactc 415
Query: 124 agctctctcctatgtcttccttccctggcttagctcttcctgtcccttgggtatcttcgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agctctctcctatgtcttccttccctggcttagctcttcctgtcccttgggtatcttcgg 355
Query: 184 tcctgggtcagctgccccctggtcatcattcctttaggtcagctctcaggggtgctccat 243
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 354 tcctgggtcagctgccccctggtcatcattcctttgggtcagctctcaggggtgctccat 295
Query: 244 atttagtatcttgtcctgtccttggttcttcagcagattcagcttcagcag-ttttgcct 302
|||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||
Sbjct: 294 atttagtatcttgtcctgtccttggttcttcagcagcttc----tca--aggttttgcct 241
Query: 303 ggttctctcacagcccagcttccagtcagagacgtgtcagagtcagagtggggctcctca 362
||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 240 ggttctctcacagcccagcttccagtcagagacgtgt---------agtggggctcctca 190
Query: 363 tgggattctggtgccctagctatgtagctttcttgtctcatctcctagctcagaggttcc 422
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 189 tgggattctggtgccctagctatgtagctttctcgtctcatctcctagctcagaggttcc 130
Query: 423 tactgcttgggatctcagactctgccctctgggttggtttcttactaaggcaggaacacc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tactgcttgggatctcagactctgccctctgggttggtttcttactaaggcaggaacacc 70
Query: 483 tggttcaatcatgcttctggcttgcctctgggtaagcaggaacagcttacgtgtttctgg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 tggttcaatcatgcttctggcttgcctctgggtaagcaggaacagcttacgtgtttctgg 10
Query: 543 tagcagagg 551
|||||||||
Sbjct: 9 tagcagagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1008
Length adjustment: 10
Effective length of query: 603
Effective length of database: 998
Effective search space: 601794
Effective search space used: 601794
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_p16.g1 MSMg01no539_p16.g1 CHROMAT_FILE:
MSMg01no539_p16.g1 PHD_FILE: MSMg01no539_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:06 2005
(665 letters)
>mm_chr13_72887588_72888652
Length = 1065
Score = 1255 bits (649), Expect = 0.0
Identities = 661/665 (99%)
Strand = Plus / Plus
Query: 1 cctaaagaagcagaattagttcctcctatcaccagagacaaaccacaggaagggctgcaa 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaaagaagcagaattagttcttcctatcaccagagacaaaccacaggaagggctgcaa 260
Query: 61 aagaagggagggaacagaggagagaaagagcaaggacaggaagagaaagagatccaccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaagggagggaacagaggagagaaagagcaaggacaggaagagaaagagatccaccat 320
Query: 121 aagtgattggttggtccggtgtgggctggcaaagatgaactgtgcagaatgctaatgagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgattggttggtccggtgtgggctggcaaagatgaactgtgcagaatgctaatgagc 380
Query: 181 tgggaattagcaggtgaatggatgccccaatctggaacttccaatccaaaggctgagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggaattagcaggtgaatggatgccccaatctggaacttccaatccaaaggctgagctg 440
Query: 241 aggtgggctcctcagtgctgccctgaggcagccttgctgctttcaagagaaagtagtttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtgggctcctcagtgctgccctgaggcagccttgctgctttcaagagaaagtagtttt 500
Query: 301 tttcttcttcttcttcaggtttttagtagtgatatagcagccatgtggcttaggacagca 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttttcttcttcttcaggtttttagtagtgatatagcagccatgtggcttaggacagca 560
Query: 361 aagagctcaacttagggttcatggattcaagagtaaaccacattctaaacatcctgttca 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 aagagctcaacttagggttcatggattcaagagtaaaccacattttaaacatcctgttca 620
Query: 421 gcatcgccttgcctctgggtcagtcttgccctctgtggccttatcaaggagaagccccat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatcgccttgcctctgggtcagtcttgccctctgtggccttatcaaggagaagccccat 680
Query: 481 agtcatgcctcctggtgtgttcccaccagttctgggttatacatatcagctaggaacaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtcatgcctcctggtgtgttcccaccagttctgggttatacatatcagctaggaacaat 740
Query: 541 tatgcacagcttccaacactctcagaaaggttcaattgtgaagacagaaactcatcccac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatgcacagcttccaacactctcagaaaggttcaattgtgaagacagaaactcatcccac 800
Query: 601 ttcaagggaaggtctgggactccatcaagcccacagaacaggttgtcggaattttatacc 660
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttcaagggaaggtctgagactccatcaagcccacagaacaggttgtcggaattttatacc 860
Query: 661 tgctt 665
|||||
Sbjct: 861 tgctt 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
