Query= MSMg01no540_d12.b1 MSMg01no540_d12.b1 CHROMAT_FILE:
MSMg01no540_d12.b1 PHD_FILE: MSMg01no540_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:25 2005
(656 letters)
>mm_chr13_52137500_52138556
Length = 1057
Score = 1224 bits (633), Expect = 0.0
Identities = 651/657 (99%), Gaps = 1/657 (0%)
Strand = Plus / Minus
Query: 1 tgtaaagagtaggggtaggtacctgggaaggcctgacctcatggtagggggaggggaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tgtaaagagtaggggtaggtacctgggaaggcctgacctcatggtagggggaggggaagg 798
Query: 61 agaagatgggggtgcgacacctctaagatctatataatagtggcagataagatctaaaac 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 797 agaagatgggggtgcgacacctctaagatctatataatagtggctgataagatctaaaac 738
Query: 121 ccctggcagaggggtagaaggataccagcacaagatggtgagggactcctctacttccaa 180
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 737 ccctggcagaggggtagaaggatcccagcacaagatggggagggactcctctacttccaa 678
Query: 181 agatttggaggggcataaaataagaagacgtgacatctcaaaacgtggctctaaagtagg 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 677 agatttggaggggcataaaataagaagatgtgacatctcaaaacgtggctctaaagtagg 618
Query: 241 aactgagcctaactgtttaatctcattagcaatgagatgtgagaagaaaccacacacgtg 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 617 aactgagcctaactgtttaatctcattagcaatgagatgtcagaagaaaccacacacgtg 558
Query: 301 tgggaagggaagacacggcttccgtgttcaaagtcttgggaagaagtgtggggtgggatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgggaagggaagacacggcttccgtgttcaaagtcttgggaagaagtgtggggtgggatc 498
Query: 361 attgcctagcgatctgtgtccacctgtgcctgctgacaggacacctctgcttatcctaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 attgcctagcgatctgtgtccacctgtgcctgctgacaggacacctctgcttatcctaga 438
Query: 421 tccccaggccctgactggtaccaatgattatgagaacagtacttgcctttttcctcccca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tccccaggccctgactggtaccaatgattatgagaacagtacttgcctttttcctcccca 378
Query: 481 gaaaacagacccagataagagagggaaagatcacggacagacagggacctggggcagaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaaaacagacccagataagagagggaaagatcacggacagacagggacctggggcagaat 318
Query: 541 gagaaggcgggagagaaaagaggtgcccagagagcggtgagtgaccaggtttcagggcag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gagaaggcgggagagaaaagaggtgcccagagagcggtgagtgaccaggtttcagggcag 258
Query: 601 catacac-agcatgcatgccacttggagacagagccctggcacagggcccaggaact 656
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 catacacaagcatgcatgccacttggagacagagccctggcacagggcccaggaact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1057
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1047
Effective search space: 676362
Effective search space used: 676362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_d12.g1 MSMg01no540_d12.g1 CHROMAT_FILE:
MSMg01no540_d12.g1 PHD_FILE: MSMg01no540_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:25 2005
(622 letters)
>mm_chr13_52011287_52012308
Length = 1022
Score = 1149 bits (594), Expect = 0.0
Identities = 615/622 (98%), Gaps = 1/622 (0%)
Strand = Plus / Plus
Query: 1 cctggcttctgggccttcagtcattgctggagaactgcacagagaagtcgggaacaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggcttctgggccttcagtcattgctggagaactgcacagagaagtcgggaacaaagt 260
Query: 61 gtcaggggtccacgaaggagacttgcacactggatctccttgctgggtcactctctggtt 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 gtcaggggtccatgaaggagacttgcacactggatctccttgctgggtcactctctggct 320
Query: 121 tgctcatagactcgcacttagctagatttcttacacagctcaggatcacttgcctaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctcatagactcgcacttagctagatttcttacacagctcaggatcacttgcctaggaa 380
Query: 181 tggtactgctcatggtggactgatcctcctacagcaattagcaattaaggcaattcctta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tggtactgctcatggtggactgatcctcctacagcaattagcaattaaggcaatccctta 440
Query: 241 cagacacaccctcaggccaagctgatctaggcaattcctcaactgaggctctcctgtgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagacacaccctcaggccaagctgatctaggcaattcctcaactgaggctctcctgtgac 500
Query: 301 tctaggttttgtagagttgataattcacgctaactaggagagcaatctgagggacctgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctaggttttgtagagttgataattcacgctaactaggagagcaatctgagggacctgta 560
Query: 361 cccattctgcagcactgatggttgtacaattggctaaattaagtctgaatgttcacagaa 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 cccattctgcagcactgatggttgcacaattggctaaattaagtctgaatgttcacagaa 620
Query: 421 gggtctctctttaagtactgattttcaagcacagagaaggtgggaggctgtgaggcaatc 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggtct-tctttaagtactgattttcaagcacagagaaggtgggaggctgtgaggcaatc 679
Query: 481 atgcacaggaggggaagggagggacaacctctaagtgggttggggtccgctcccccaccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgcacaggaggggaagggagggacaacctctaagtgggttggggtccgctcccccaccc 739
Query: 541 ccacccccagacacagatgtggctgatggggatcctgcagacttgttcactcgccaactg 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccacccccagacacaggtgtggctgatggggatcctgcagacttgttcactcgccaactg 799
Query: 601 aagcactcccgttcggaaaagt 622
||||||||||||| ||||||||
Sbjct: 800 aagcactcccgtttggaaaagt 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
