BAC Information

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BAC

Clone NameMSMg01-540G02
Chromosome13 (Build37)
Map Location 87,073,396 - 87,073,822
singlet/doubletsinglet
Overlap genenone
Upstream geneCox7c, LOC100042887, LOC100042893
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540G02.T7 (MSMg01no540_g02.b1)MSMg01-540G02.TJ (MSMg01no540_g02.g1)
ACCAG606645AG606646
length687731
length of high quality
(start - end)
67 (81 - 147)433 (85 - 517)
definitionCHROMAT_FILE: MSMg01no540_g02.b1 PHD_FILE: MSMg01no540_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:38 2005CHROMAT_FILE: MSMg01no540_g02.g1 PHD_FILE: MSMg01no540_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTGCACGGTTTTGGTCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
CAGAGGACCGCGGAATCCACTTTTACCCAATGCTGCCTTTCAAAAGATAA
ATATCGTAGCCCTCACATTACCNTTAAAGTAATAATTTTTCTAGGTAATA
TTTAATATTTGAATGATGCCCTCAGTCCTTAATCCGGAACCTTGGAGGGA
AGAAATAAGTCCTAGGATTTCCCCCAAAAGGGGTCACACTAACAAAATTT
TTTTTTCTTCGGGGGGCCAAAATAAAAAAACCGCGGGGGGGGGTTTCCAA
AAAACATTTTGGGGGGGGGGGAAAAAACTCCCCCTGGGGGGGGGGCCCCT
AATATTTTTTGGGGGCGTTTTTTCACCCACGGGGGGGGGGGGTGTAATAA
ACACATTCTTTTCCTCCCCCCCCCCCGTTATTCCATAACTCTTCCTTTCT
TTTTTCGCTCCCCTCCCGCCCCTCGTTTCCTTTTCTTTTGTGCTCCTGCC
TCTCGTTTCTCCCCCCCCCCNCTCTTCATGCTTTTCTTTTCCCCAGCGTG
CCTGCCTCGCCTCTGCGGGACGGGGGTGTTTTTTTTGAGCCAAGCGTGCC
GACCATCCCCTCCCACATCTATTTCTCTCCTCCTCCACTTCACTTGTTCT
TACGTTGTGACCTCTTTGCGATGCGACTTTTTTATAG
AAAAAAACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTACTTTTCACTGA
AACAGTAGGAAAGGAGCGCTGATAGCAGAACACTGCAAGCAGAATGAAAA
ATTATTTTAAACAGAAAACCACAAAAAAGTCACCCTATTCCACAAAGGCT
AGTAGTCAAAATATTTCCTTTGTAAAATCAGTAAAGAAAAAATAGAAATA
AGCAAAAAAAAAAAAATCCTTATAAACAATGTTCTCTGTGGTCAGTGAAG
TTTTGTTCCAAAAGGGTTGATCTATATCTGAAGAAGGCATCAGAAGTTGG
AGTTGTTTATCTAGTAATTACTGCCTTTGCTAGCATGCAAATTACAAAGG
TAACTGTGAAATTGTGGATTACAATATTGTGGAAAACTACTGATAAATAA
CAAGGTACAGGTAAGTCAAATTACTCACATGGCACACTCGAGAAAGATGT
ACTATGATGAAAGATGAAGACCACATTTAAGAAGATACCTAGTTTGGATT
TTGCCTTGCTGGATTTGCAGTTTTTGTTTTTGGTTCCTCATTCTTGAAGG
TTATGTTTTAGAAAGGGGATGCTTTAAGTCTTTCTCCTCAGAATCTTTTA
GGTTTGGAAAATTTTTCCCTTTAATTTTATTTTATTTACCCAAAGCCCCA
AGGCTTTTAAGGGGGAATTAAAAGGGATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_g02.g1 MSMg01no540_g02.g1 CHROMAT_FILE:
MSMg01no540_g02.g1 PHD_FILE: MSMg01no540_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:38 2005
         (433 letters)



>mm_chr13_87073196_87074022
          Length = 827

 Score =  758 bits (392), Expect = 0.0
 Identities = 421/434 (97%), Gaps = 8/434 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtacttttcactgaaacagtaggaaaggagcgctgatagcagaacactgcaagcagaa 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 627 atgtacttttcactgaaacagtaggaaaggagctctgatagcagaacactgcaagcagaa 568

                                                                       
Query: 61  tgaaaaattattttaaacagaaaaccacaaaaaagtcaccctattccacaaaggctagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgaaaaattattttaaacagaaaaccacaaaaaagtcaccctattccacaaaggctagta 508

                                                                       
Query: 121 gtcaaaatatttcctttgtaaaatcagtaaagaaaaaatagaaataagcaaaaaaaaaaa 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtcaaaatatttcctttctaaaatcagtaaagaaaaaatagaaataagcaaaaaaaaaaa 448

                                                                       
Query: 181 aatccttataaacaatgttctctgtggtcagtgaagttttgttccaaaagggttgatcta 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aatccttaaaaacaatgttctctgtggtcagtgaagttttgttccaaaagggttgatcta 388

                                                                       
Query: 241 tatctgaagaaggcatcagaagttggagttgtttatctagtaattactgcctttgctagc 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 catctgaagaaggcatcagaagttggagttgtttatctagtaattactgcctttgctagc 328

                                                                       
Query: 301 atgcaaattacaaaggtaactgtgaaattgtggattacaatattgtggaaaactactgat 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atgcaaactacaaaggtaactgtgaaattgtggattacaatattgtggaaaactactgat 268

                                                                       
Query: 361 aaataacaaggtacaggtaagtcaaattactcacatggcacactcgagaaagatgtact- 419
           ||||||||      ||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 267 aaataaca------aggtaagtcaaattactcacatggcacactcgagaaagatgta-tg 215

                         
Query: 420 atgatgaaagatga 433
           ||||||||||||||
Sbjct: 214 atgatgaaagatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 827
Length adjustment: 9
Effective length of query: 424
Effective length of database: 818
Effective search space:   346832
Effective search space used:   346832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)