BAC Information

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BAC

Clone NameMSMg01-540K11
Chromosome13 (Build37)
Map Location 108,526,069 - 108,659,396
singlet/doubletdoublet
Overlap geneZswim6
Upstream geneIpo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366, Apoo, AI197445, LOC100040820
Downstream gene3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, Pde4d, EG668144, LOC621663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540K11.T7 (MSMg01no540_k11.b1)MSMg01-540K11.TJ (MSMg01no540_k11.g1)
ACCAG606854AG606855
length750728
length of high quality
(start - end)		572 (71 - 642)545 (76 - 620)
definitionCHROMAT_FILE: MSMg01no540_k11.b1 PHD_FILE: MSMg01no540_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:00 2005CHROMAT_FILE: MSMg01no540_k11.g1 PHD_FILE: MSMg01no540_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,526,069 - 108,526,639)(108,658,853 - 108,659,396)
sequence
NAAATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGCATGTCCTGCAGAAGAGAAGAGTAGTATTTAGTTCTAT
CCCTGACTAAAATGCTATTAGCAAGTCACAGCTGCTTGGAGAGGCAGCCT
CCATTTCCTTCAGGGTAGGCTCCCTGTGCTCCAGTGAAATGTTACACACC
CAAGAGTATACTTGGGCAGTACAAAGTAGACTTAATTGTTAAGAATTGGG
TGGGTAGGGAAGTAGGGCAAGGACCTGGGAGGAGCTGGAAGAGGAGGTGA
GGAGGATTCAAAATTCTCCAAGAACTCATTTTTCTGAGGAGAGAGGGGGA
AAAAAAGGATGTCAAAGCTTGCTTTCCCTCTGTCAAGGAAGGACAGAAAG
AAGCACAGTTAGCCAAGCCCTTGGCCTTGGATTCCAGGCTCTGTGAATTC
CTAAAACACTGAGAGAAATAAAAACCTCCTAGTGATCCCACCTGGCTACC
ACACAGCGCCCAGGCGACTGAATGAATCCTCCAGTCCATTTTACTGCAAG
ACAGATGCTAGCAATCTGTACTGCAGGCAACCCTTCTTCCTCACTTTCTC
CATTCCCTCTCAAAGGCTCCCTTTAAACACACCACATTATCTTCTTATCA
TTCAGAGAAAGCCAAAATGAAGAATCAACAAGAATAACACGTCAGGCAGT
ACAATTTATCTTTTAGATTAATAAGGACTATATTCCCAGAATTTCAGTGG


NGGCATGCTGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTACAGGGACCTGAGACCACGGCG
ATGGCTTTTGTGGGTTTTTTGGAGAGTTTGATGCTTTCTTCCTGTTGTCG
GTCTATTTTGACTCTTCCTAGTTGAGGGGTTACCAAGCTGCCCTTGGTTG
TTAGTGCCATCGGATGGCAGACCCAGGAAACACTGTCATTTCCCGTTTAG
CAGCTTGCTCTCATCCCCTAGCTTAAGCAGTTCGTAGAGTATGAAGTGTT
AATATTTACATCCTCCTTTGAAGGTGCCAGGCAGCGGTCAGAAGTACTTT
TAAAATTCATTGTATTAGAGCAATCTCCAATGATGTGTTAGTGGTGTCCA
CAGTCTGCTCATGAAAGAAGCACCAGGCGTTTTGAGCAGAAAGGGATTTA
ATACACAAAATTGGTTACAATGCATTTGGAAGGAGCTGAGGGCGAAAGTG
TTGAGGTTAATGCTGGATCAGCAAATGGGTTTAAAGTAGGTTTATGTGTG
TGAGCACATGGCATAGGTGAGTTCTGAAGGGACAAAGGGACAAAGTGAGG
AGGAGATGCTACCCATTCCCTGGGTCAGATGAGGGTTGAATGATCTGTTG
TGTAGCTTAGATTCTGCTGCTTAGAAACACACAGATGATGCGGGCCATGT
TCAGCCCTTTGCTGCTGTGCCTGTGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_k11.b1 MSMg01no540_k11.b1 CHROMAT_FILE:
MSMg01no540_k11.b1 PHD_FILE: MSMg01no540_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:00 2005
         (572 letters)



>mm_chr13_108525869_108526839
          Length = 971

 Score = 1060 bits (548), Expect = 0.0
 Identities = 566/572 (98%), Gaps = 1/572 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagaagagaagagtagtatttagttctatccctgactaaaatgctattagcaagtcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagaagagaagagtagtatttagttctatccctgactaaaatgctattagcaagtcaca 260

                                                                       
Query: 61  gctgcttggagaggcagcctccatttccttcagggtaggctccctgtgctccagtgaaat 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gctgcttggagaggcagcctccatttcctccagggtaggctccctgtgctccagtgaaat 320

                                                                       
Query: 121 gttacacacccaagagtatacttgggcagtacaaagtagacttaattgttaagaattggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttacacacccaagagtatacttgggcagtacaaagtagacttaattgttaagaattggg 380

                                                                       
Query: 181 tgggtagggaagtagggcaaggacctgggaggagctggaagaggaggtgaggaggattca 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tgggtagggaagtagggcaaggacctgggaggagctggaagaggaggtaaggaggattca 440

                                                                       
Query: 241 aaattctccaagaactcatttttctgaggagagagggggaaaaaaaggatgtcaaagctt 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 aaattctccaagaactcatttttctgaggagagaggggg-aaaaaaggatgtcaaagctt 499

                                                                       
Query: 301 gctttccctctgtcaaggaaggacagaaagaagcacagttagccaagcccttggccttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctttccctctgtcaaggaaggacagaaagaagcacagttagccaagcccttggccttgg 559

                                                                       
Query: 361 attccaggctctgtgaattcctaaaacactgagagaaataaaaacctcctagtgatccca 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 560 attccaggctctgtgaattcctaaaacaccgagagaaataaaaacctcctagtgatccca 619

                                                                       
Query: 421 cctggctaccacacagcgcccaggcgactgaatgaatcctccagtccattttactgcaag 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 620 cctggctaccacacagcgcccaggcgactgaatgaatcctccagtccattttactgcagg 679

                                                                       
Query: 481 acagatgctagcaatctgtactgcaggcaacccttcttcctcactttctccattccctct 540
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 680 acagatgctagcaatctgtactgcaggcgacccttcttcctcactttctccattccctct 739

                                           
Query: 541 caaaggctccctttaaacacaccacattatct 572
           ||||||||||||||||||||||||||||||||
Sbjct: 740 caaaggctccctttaaacacaccacattatct 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 971
Length adjustment: 10
Effective length of query: 562
Effective length of database: 961
Effective search space:   540082
Effective search space used:   540082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no540_k11.g1 MSMg01no540_k11.g1 CHROMAT_FILE:
MSMg01no540_k11.g1 PHD_FILE: MSMg01no540_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:00 2005
         (545 letters)



>mm_chr13_108658851_108659794
          Length = 944

 Score =  998 bits (516), Expect = 0.0
 Identities = 538/546 (98%), Gaps = 3/546 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacagggacctgagaccac-ggcgatggcttttgtgggttttttggagagtttgatgc 59
           ||||||||||| ||||||||| |||||||||||||||||||||||||  |||||||||||
Sbjct: 546 tttacagggacttgagaccacaggcgatggcttttgtgggttttttg--gagtttgatgc 489

                                                                       
Query: 60  tttcttcctgttgtcggtctattttgactcttcctagttgaggggttaccaagctgccct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 488 tttcttcctgttgtcggtctattttgactcttcctagttgaggggttaccaagctgccca 429

                                                                       
Query: 120 tggttgttagtgccatcggatggcagacccaggaaacactgtcatttcccgtttagcagc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tggttgttagtgccatcggatggcagacccaggaaacactgtcatttcccgtttagcagc 369

                                                                       
Query: 180 ttgctctcatcccctagcttaagcagttcgtagagtatgaagtgttaatatttacatcct 239
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 368 ttgctctcatcccctagcttaagcagttcatagagtatgaagtgttaatatttacatcct 309

                                                                       
Query: 240 cctttgaaggtgccaggcagcggtcagaagtacttttaaaattcattgtattagagcaat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cctttgaaggtgccaggcagcggtcagaagtacttttaaaattcattgtattagagcaat 249

                                                                       
Query: 300 ctccaatgatgtgttagtggtgtccacagtctgctcatgaaagaagcaccaggcgttttg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctccaatgatgtgttagtggtgtccacagtctgctcatgaaagaagcaccaggcgttttg 189

                                                                       
Query: 360 agcagaaagggatttaatacacaaaattggttacaatgcatttggaaggagctgagggcg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 agcagaaagggatttaatacacaaaattggttacaatgcatttggaaggagctgagggcg 129

                                                                       
Query: 420 aaagtgttgaggttaatgctggatcagcaaatgggtttaaagtaggtttatgtgtgtgag 479
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 128 aaagtgttgaggttaatgctggatcagcgaatgggtttaaagtaggtttatgtgtgtgag 69

                                                                       
Query: 480 cacatggcataggtgagttctgaagggacaaagggacaaagtgaggaggagatgctaccc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cacatggcataggtgagttctgaagggacaaagggacaaagtgaggaggagatgctaccc 9

                 
Query: 540 attccc 545
           | ||||
Sbjct: 8   actccc 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 944
Length adjustment: 10
Effective length of query: 535
Effective length of database: 934
Effective search space:   499690
Effective search space used:   499690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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