Query= MSMg01no541_f20.b1 MSMg01no541_f20.b1 CHROMAT_FILE:
MSMg01no541_f20.b1 PHD_FILE: MSMg01no541_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:59 2005
(663 letters)
>mm_chr13_103355534_103356596
Length = 1063
Score = 1044 bits (540), Expect = 0.0
Identities = 601/626 (96%), Gaps = 11/626 (1%)
Strand = Plus / Plus
Query: 49 tgtttggacatactgactttgagagcctttgagatgatccactaaaggtgtctgtaggtc 108
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 238 tgtttggacatactgactttgagagcctttgagacgatccactaaaggtgtctgtaggtc 297
Query: 109 cttgggaccaagtcttggagtttaagataaagtctaacacgtggctctaaacactgttag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cttgggaccaagtcttggagtttaagataaagtctaacacgtggctctaaacactgttag 357
Query: 169 tgtgcaggctgtctttgaaggcttgagtagggtaagcacatgcgagaggaagcttcaggg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgcaggctgtctttgaaggcttgagtagggtaagcacatgcgagaggaagcttcaggg 417
Query: 229 taaaatcctaaaggaaaggcagctgacagagaagttttaggggaaaaggaatgtggtccc 288
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 taaaatcttaaaggaaaggcagctgacagagaagttttaggggaaaaggaatgtggtccc 477
Query: 289 ccacagctcagagctgcactcagaatctcatcctaaactctgactcttaacattcaccat 348
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ccacagctaagagctgcactcagaatctcatcctaaactctgactcttaacattcaccat 537
Query: 349 ctccacatttgaaaaggacacattcccctattggatctcagggtaagcatgaaagtaaac 408
|||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||
Sbjct: 538 ctccacatttgaaaaggacacattcctctattggatctcatggtaagcatgtaaggaaac 597
Query: 409 ttttgaagactatgagagctgatattgtcatcttcacagatgcatggctgaagcagtact 468
|||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 598 ttttgaagacggtgagagctgatattgacatcctcacaaatgcatggctgaagcagtact 657
Query: 469 tcctccctccctc----cctc--tc--tcccccccc---acctccttccctattgttcca 517
|||||||||||| |||| || ||||||||| |||||||||||||||||||||
Sbjct: 658 ccctccctccctcgctccctccctccctcccccccccccacctccttccctattgttcca 717
Query: 518 acatatttcagctctgacagatgacttcttgtgctttatacaacctccgatgttgggtga 577
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 718 acatatttcagctctgacagatgacttcttgtgctttatacaacctccggtgttgggtga 777
Query: 578 gatgcctttcacctccactgtttctctagggatgccaccctggctttggctctgggccag 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gatgcctttcacctccactgtttctctagggatgccaccctggctttggctctgggccag 837
Query: 638 accatgctggctgcacgcaatgttcc 663
||||||||||||||||||||||||||
Sbjct: 838 accatgctggctgcacgcaatgttcc 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_f20.g1 MSMg01no541_f20.g1 CHROMAT_FILE:
MSMg01no541_f20.g1 PHD_FILE: MSMg01no541_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:59 2005
(632 letters)
>mm_chr13_103445093_103446121
Length = 1029
Score = 774 bits (400), Expect = 0.0
Identities = 428/440 (97%), Gaps = 8/440 (1%)
Strand = Plus / Minus
Query: 1 aattgctcttgttcttgtacctcaaagagtcagacctctagagatcatctttctccttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aattgctcttgttcttgtacctcaaagagtcagacctctagagatcatctttctccttcc 377
Query: 61 tgccttagttactaatgagttttatcgttcattgacagtcctgctgcaaaacaaaagact 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 376 tgccttagttactaatgagttttattgttcattgacagtcctgctgcaaaacaaaaga-- 319
Query: 121 ccccccccctccatttacaaaataaaagcttgcaaagatcagacctttagagaattcttc 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ccccccccc-ccatttacaaaataaaagcttgcaaagatcagacctttagagaattcttc 260
Query: 181 atctattgtaacctcctttcttctgtttcctgaggtcaaaggcatttttgcatggtgatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atctattgtaacctcctttcttctgtttcctgaggtcaaaggcatttttgcatggtgatt 200
Query: 241 gtc----ttagggtttctattcttgcacaaacatcatgaccaagaagcaagttggggagg 296
||| ||||||||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct: 199 gtcttagttagggtttctattcctgcacaaacatcgtgaccaagatgcaagttggggagg 140
Query: 297 aaagggcttacacttccacattgctgttcatcacctaaggaagtcagtcaggtcagaaac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 aaagggcttacacttccacattgctgttcatcacctaaggaagtcagtcaggtcagaaac 80
Query: 357 tcacacagggcaggagcttggaggcaggagctgatgcagaggccatgggggctaggggtg 416
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tcacaca-ggcaggagcttggaggcaggagctgatgcagaggccatgggggctaggggtg 21
Query: 417 ggggtgggtgctgcttactg 436
||||||||||||||||||||
Sbjct: 20 ggggtgggtgctgcttactg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1029
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1019
Effective search space: 633818
Effective search space used: 633818
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
