Query= MSMg01no541_i07.b1 MSMg01no541_i07.b1 CHROMAT_FILE:
MSMg01no541_i07.b1 PHD_FILE: MSMg01no541_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:12 2005
(672 letters)
>mm_chr13_47995880_47996951
Length = 1072
Score = 1224 bits (633), Expect = 0.0
Identities = 660/669 (98%), Gaps = 2/669 (0%)
Strand = Plus / Plus
Query: 5 gaattcatagatgtctgtatcagggagccttgttcatatgattcttaatctcagtctctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagatgtctgtatcagggagccttgttcatatgattcttaatctcagtctctt 264
Query: 65 ttcacttatttttggttgattgggttacagctctatttgtcttgtttatatttttaaatg 124
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 ttcacttatttttggttgattgggttacaggtctatttgtcttgtttatatttttaaatg 324
Query: 125 accagttcttagatttattgatcttgtattgttgtcttcatttctacttaaccaagtgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accagttcttagatttattgatcttgtattgttgtcttcatttctacttaaccaagtgaa 384
Query: 185 atttctattttgcctcttgcaggtgtttccagcagattccagccaatgcttaggcatgat 244
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 atttctattttgcctcttgcaggtgtttccagcagattccagccaacgcttaggcatgat 444
Query: 245 ggtaggactgaatgggaccagggcagagcacttttagctcagaggcctgtgtgttttgct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtaggactgaatgggaccagggcagagcacttttagctcagaggcctgtgtgttttgct 504
Query: 305 tcagggaatctcctcagcctgcttgagttttgatttttggtttttgttgttgttttgttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcagggaatctcctcagcctgcttgagttttgatttttggtttttgttgttgttttgttt 564
Query: 365 tgttttgtctttgctattttgtttgttttttaaatcaaattattgattaagaattcatcc 424
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgttttgtcgttgctattttgtttgttttttaaatcaaattattgattaagaattcatcc 624
Query: 425 acgcatacaaagtagcttgatcctgtttacctccattctctcccctcaattcctccccat 484
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacatacaaagtggcttgatcctgtttacctccattctctcccctcaattcctccccat 684
Query: 485 c-tcccatcccccatccccacttttccttcccaacttcatgtgctcttaaattcactgag 543
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctcc-atcccccatccccacttttccttcccaacttcatgtgctcttaaattcactgag 743
Query: 544 cttacttggtgctggctgtgtgggaatggggtcacctgaatcatggtagctcctctgtaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cttacttggtgctggctgtgtgggaatggggtcacctgaatcatggtagctcctctgtaa 803
Query: 604 ctgttcgggcttttctatgtccgccacggctccccagtgatgacgcttacgtattatttt 663
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 804 ctgttcgtgcttttctatgtccgccacagctccccagtgatgacgcttacgtattatttt 863
Query: 664 caatgctta 672
|||||||||
Sbjct: 864 caatgctta 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_i07.g1 MSMg01no541_i07.g1 CHROMAT_FILE:
MSMg01no541_i07.g1 PHD_FILE: MSMg01no541_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:12 2005
(470 letters)
>mm_chr13_48136880_48137750
Length = 871
Score = 861 bits (445), Expect = 0.0
Identities = 465/473 (98%), Gaps = 5/473 (1%)
Strand = Plus / Minus
Query: 1 ttgaaaagtaaaaaaaaaaaaaaaaaaaattgaatagtaggtcaagtgtcgattccaaat 60
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ttgaaaagt--aaaaaaaaaaaaaaaaaattgaatagtaggtcaagtgtcgattccaaat 574
Query: 61 ggattcattttaaaattaaaaag-aaaaaaaaaagtctgtgttcacacacaagagccact 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 573 ggattcattttaaaattaaaaagaaaaaaaaaaagtctgtgttcacacacaagagccact 514
Query: 120 catgtttctataggattaagtatttcaggtgcctaagaataaaagagaagctaaatgaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 catgtttctataggattaagtatttcaggtgcctaagaataaaagagaagctaaatgaag 454
Query: 180 cacatatcaagtagaaccctttaatgagggacatatttgtcctaggatggtattcctgat 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cacatatcaagtagagccctttaatgagggacatatttgtcctaggatggtattcctgat 394
Query: 240 gtcattttgatggctggaatgaagatttgttagaggaagacgttttccccaaattaatag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtcattttgatggctggaatgaagatttgttagaggaagacgttttccccaaattaatag 334
Query: 300 cagaagcaggatgcatctggaaatacttgctaataagggcgaaatacttgatttctgagt 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 333 cagaagcaggatgcatctggaaatacttgctaataagggtgaaatacttgatttctgagt 274
Query: 360 ccaattaattcagaagtgactctaggtctccagccctattaaatctctctctctc--cct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 273 ccaattaattcagaagtgactctaggtctccagccctattaaatctctctctctctccct 214
Query: 418 ctcactctccctctccctctccctctccctctccctctccctctccctctccc 470
||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ctccctctccctctccctctccctctccctctccctctccctctccctctccc 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 871
Length adjustment: 10
Effective length of query: 460
Effective length of database: 861
Effective search space: 396060
Effective search space used: 396060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
