NNNCCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTCACTATTTATTATGGGAGAAGGGTCTGAAGGCACTTT
GGCTGCCCAGTCCTGCAGGGTAAGAACTGAGGACCTTTGTGTGTGCTAAT
GGGCAGCTTTACATACAGCCGTACTCAGGAGACTTGAATTCTGGTACATG
AGTTCTTCTGACCTTGTGGATTTCCCCCTCAGCATCATCCAGCTTTTGAA
GGAATATTGAGAGGCCTAGCACTGTTATATATTGTCTGCCTGTGAAATAA
CTGGAAGCTGAGGAGAGAGTAGCAAGCAGCAAACAGAGCGTCCCTTCTGA
AGCATGTCTTCTGTGTGTAATGATTATCTTTGATGTTCATAGAGCCAAAG
TATGATAATTATAAACAGCTAATGTCTATTTGTGCATATTTAGGAAAATA
TGTAGCTAAAAGAACAGCTAAGACAGAATCCCTTCACTCTTCAAGGAAGA
TCTTTTAAACCAAAGGAAGAAAGTCACATTCTAAGTAGGGTGACGACAAA
TTCCAAGCTAGACTACTTATAGTGTGACACTTTGTACTAACAGGAAGCAT
AAAGTAGAGCTAATAAATTTTGCATCAATATATAACTTTATTCTATATTT
TTGTTGAACCTTTAATTTTTATTGCTAAAGCTATGAAAATCATATTACAT
ATGTTTATTCTTCTTTTTAATGTAAGATGTACTAGAGGGCCAACTCCTGC
TAACAATCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGTTTAGCTCTATACCCCATTATTTAATTGGG
TTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTTTTTATATATATTGGA
TATTAGTCCCCTATTTGATTTAGGATATGTAAAGATCCTTTCCCAATCTG
TTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTCACAGAAGCTT
TGAAATTTTATGAGGTCCCATTTGTCAATTCTGATCTTACAGCACAAGCC
ATTGCTGTTCTATTCAGGAATTTTCCCCCTGTGCCCATATCTTCGAGGCT
TTCTCCCACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTATGTGGA
GTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGA
TCAATTCGCATTCTTCTAAATGATAACTACCAGTTGTGCCAGCACCATTT
GTTGAAAATGCTGTTTTTTCCCCCCACTGGATGTTTTTAGCTCCCTTGTC
AAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTC
TATTCCATTGGTCTACTTGTCTGTCGCTATACCAGTACTATGTCGTTTTT
ATCACTATTGCTCTGTAGTACAGCTTTANGTCAGGCATGGTGATTCCACC
AGAGGTACTTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTTG
TATTCCAGATGATCT

Query= MSMg01no541_j24.b1 MSMg01no541_j24.b1 CHROMAT_FILE:
MSMg01no541_j24.b1 PHD_FILE: MSMg01no541_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:21 2005
         (655 letters)



>mm_chr13_84943272_84944327
          Length = 1056

 Score = 1222 bits (632), Expect = 0.0
 Identities = 647/654 (98%), Gaps = 5/654 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcact---atttattatgggagaagggtctgaaggcactttggctgcccagt 61
           |||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gaattcattcactaaca--tattatgggagaagggtctgaaggcactttggctgcccagt 799

                                                                       
Query: 62  cctgcagggtaagaactgaggacctttgtgtgtgctaatgggcagctttacatacagccg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cctgcagggtaagaactgaggacctttgtgtgtgctaatgggcagctttacatacagccg 739

                                                                       
Query: 122 tactcaggagacttgaattctggtacatgagttcttctgaccttgtggatttccccctca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tactcaggagacttgaattctggtacatgagttcttctgaccttgtggatttccccctca 679

                                                                       
Query: 182 gcatcatccagcttttgaaggaatattgagaggcctagcactgttatatattgtctgcct 241
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 678 gcatcatccagcttttgaaggaatattgagaggcctagcactgttgtatattgtctgcct 619

                                                                       
Query: 242 gtgaaataactggaagctgaggagagagtagcaagcagcaaacagagcgtcccttctgaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtgaaataactggaagctgaggagagagtagcaagcagcaaacagagcgtcccttctgaa 559

                                                                       
Query: 302 gcatgtcttctgtgtgtaatgattatctttgatgttcatagagccaaagtatgataatta 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gcatgtcttctgtgtgtaatgattatctttgatgttcatagagccaaagtatgataatta 499

                                                                       
Query: 362 taaacagctaatgtctatttgtgcatatttaggaaaatatgtagctaaaagaacagctaa 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taaacagctaatgtctatttgtgcatatttaggaaaatatgtagctaaaagaacagctaa 439

                                                                       
Query: 422 gacagaatcccttcactcttcaaggaagatcttttaaaccaaaggaagaaagtcacattc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gacagaatcccttcactcttcaaggaagatcttttaaaccaaaggaagaaagtcacattc 379

                                                                       
Query: 482 taagtagggtgacgacaaattccaagctagactacttatagtgtgacactttgtactaac 541
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taagtaaggtgacgacaaattccaagctagactacttatagtgtgacactttgtactaac 319

                                                                       
Query: 542 aggaagcataaagtagagctaataaattttgcatcaatatataactttattctatatttt 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aggaagcataaagtagagctaataaattttgcatcaatatataactttattctatatttt 259

                                                                 
Query: 602 tgttgaacctttaatttttattgctaaagctatgaaaatcatattacatatgtt 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgttgaacctttaatttttattgctaaagctatgaaaatcatattacatatgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1056
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1046
Effective search space:   674670
Effective search space used:   674670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)