Query= MSMg01no541_p04.b1 MSMg01no541_p04.b1 CHROMAT_FILE:
MSMg01no541_p04.b1 PHD_FILE: MSMg01no541_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:48 2005
(540 letters)
>mm_chr13_30700967_30701906
Length = 940
Score = 998 bits (516), Expect = 0.0
Identities = 536/554 (96%), Gaps = 18/554 (3%)
Strand = Plus / Plus
Query: 5 gaattctttcagttgaaagtaacaacttaagtaatcaggcatttgtattcattgtccagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gaattctttcagttgaaagtaacaacttaagtaatcaggcatttgtattcattgtccagg 246
Query: 65 gatgcctcaaacat------------------gtgtgtgtgtgtgtgtgtgtgtgtgtgt 106
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 247 gatgcctcaaacatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 306
Query: 107 gtgtgtatgacagacaccaaatagacatgtgaggtcctttttcttggcttgtagtggcta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtgtgtatgacagacaccaaatagacatgtgaggtcctttttcttggcttgtagtggcta 366
Query: 167 tcttcatactgtgtcctgacactgttcttcactttctaatttcttcttagaacactagcc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcttcatactgtgtcctgacactgttcttcactttctaatttcttcttagaacactagcc 426
Query: 227 agactggattatggttcaccctaatatgcccagtttaactcacataccttttaaagactc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agactggattatggttcaccctaatatgcccagtttaactcacataccttttaaagactc 486
Query: 287 catctctaaatataattccatatgaggtcctggcatccaagcttcaacatatgaatttta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 catctctaaatataattccatatgaggtcctggcatccaagcttcaacatatgaatttta 546
Query: 347 cctggacacaattcagccacaagtctttttaatatgcaccatagaggcaagctgttgtta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cctggacacaattcagccacaagtctttttaatatgcaccatagaggcaagctgttgtta 606
Query: 407 tctcaggtattgtagtcaagggaagaaataagaaaaggtgatactatttcttttagtaaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tctcaggtattgtagtcaagggaagaaataagaaaaggtgatactatttcttttagtaaa 666
Query: 467 atatcaagcattatcatgggagatacttgatagatttcatttgctacgtcaatgaccaat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 atatcaagcattatcatgggagatacttgatagatttcatttgctacgtcaatgaccaat 726
Query: 527 gaccagatatgtag 540
||||||||||||||
Sbjct: 727 gaccagatatgtag 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_p04.g1 MSMg01no541_p04.g1 CHROMAT_FILE:
MSMg01no541_p04.g1 PHD_FILE: MSMg01no541_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:48 2005
(634 letters)
>mm_chr13_30842667_30843700
Length = 1034
Score = 1210 bits (626), Expect = 0.0
Identities = 632/634 (99%)
Strand = Plus / Minus
Query: 1 tatggattgcatttcagcaaggaaggttactgtttcaaatttgctgttgcctgaaatgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 tatggattgcatttcagcaaggaaggttactgtttcaaatttgctgttgcctgaaatgtg 775
Query: 61 gaacatgatgttagtggggtcctgagacccctagtatgggctgtacacgcccagcgcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gaacatgatgttagtggggtcctgagacccctagtatgggctgtacacgcccagcgcctg 715
Query: 121 aatcaagtgtgggcaagactggggacagagctgtggagggggcaggccccagagaggaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 aatcaagtgtgggcaagactggggacagagctgtggagggggcaggccccagagaggaca 655
Query: 181 tctacaaaatcacagaggtactttgaacaaattcccgcaggaagtccccttcctcggcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tctacaaaatcacagaggtactttgaacaaattcccgcaggaagtccccttcctcggcct 595
Query: 241 gctggcaggtggagtctgggggcttcacagttcagtgagccagttctctggggacatcag 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gctggcaggtggaggctgggggcttcacagttcagtgagccagttctctggggacatcag 535
Query: 301 tcctaagggactcacacggggtcggagggggataccagagaaagactcggaatagtcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tcctaagggactcacacggggtcggagggggataccagagaaagactcggaatagtcaaa 475
Query: 361 gctactcaaagaaagaaaatcagagatcgcagcttctagaactagaaccagacagtagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gctactcaaagaaagaaaatcagagatcgcagcttctagaactagaaccagacagtagag 415
Query: 421 gtgcccaatcaaagaaacaaaacccagagagagaaactcagaaaaataacaaaacacaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtgcccaatcaaagaaacaaaacccagagagagaaactcagaaaaataacaaaacacaga 355
Query: 481 gagacagggaagcagagagtggccctagcagtcggtggtggtggcaggaaacagcgaatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gagacagggaagcagagagtggccctagcagtcggtggtggtggcaggaaacagcgaatg 295
Query: 541 ggctatgcaaacggaacctcggtcccccagagatgcccctgaagctggaagttctttcct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ggctatgcaaacggaacctcggtcccccagagatgcccctgaagctggaagttctttcct 235
Query: 601 ccacacaaacagtattgggacttggtttcttgtg 634
||||||||||||||||||||| ||||||||||||
Sbjct: 234 ccacacaaacagtattgggacctggtttcttgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
