Query= MSMg01no543_d14.b1 MSMg01no543_d14.b1 CHROMAT_FILE:
MSMg01no543_d14.b1 PHD_FILE: MSMg01no543_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:31 2005
(191 letters)
>mm_chr13_71590107_71590696
Length = 590
Score = 362 bits (187), Expect = e-104
Identities = 190/191 (99%), Gaps = 1/191 (0%)
Strand = Plus / Minus
Query: 1 catgttaacattataagttttatgtggactttccacgggccgacgtgcccctctccactc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 390 catgttaacattataagttttatgtggactttccacgggccgacgtg-ccctctccactc 332
Query: 61 cgcctctacttggtacagcttgccttaatttacattttgtgagccccagagtgagaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cgcctctacttggtacagcttgccttaatttacattttgtgagccccagagtgagaataa 272
Query: 121 ttttttaaaaatcagacttgcagtctgaatagaggaatggtgagcaatcctctctctaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttttttaaaaatcagacttgcagtctgaatagaggaatggtgagcaatcctctctctaat 212
Query: 181 gttattttagg 191
|||||||||||
Sbjct: 211 gttattttagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 590
Length adjustment: 8
Effective length of query: 183
Effective length of database: 582
Effective search space: 106506
Effective search space used: 106506
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no543_d14.g1 MSMg01no543_d14.g1 CHROMAT_FILE:
MSMg01no543_d14.g1 PHD_FILE: MSMg01no543_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:31 2005
(583 letters)
>mm_chr13_71408131_71409114
Length = 984
Score = 1075 bits (556), Expect = 0.0
Identities = 580/592 (97%), Gaps = 9/592 (1%)
Strand = Plus / Plus
Query: 1 agtatggcttgctgtttaaatgttctcagatttttatccaaaatgactatgctgttttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 agtatggcttgctgtttaaatgttctcagatttttatccaaaatgactatgctgttttct 252
Query: 61 gttactacatctcatttggaactgaattgtgttt--aaaaaaaaaaaagtgcctttggag 118
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 253 gttactacatctcatttggaactgaattgtgtttaaaaaaaaaaaaaagtgcctttggag 312
Query: 119 atcaaagtcctgctctgtgagttagtaactaagttcaatt------taaaaaaaaaaaaa 172
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 313 atcaaagtcctgctctgtgagttagtaactaagttcaattaaaaaaaaaaaaaaaaaaaa 372
Query: 173 aacctccaggacaacaggcaaaccagttactatgcctgtgccatgtctttt-tcaccaca 231
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 373 aacctccaggacaacaggcaaaccagttactatgcctgtgccatgtcttttctcaccaca 432
Query: 232 cagcctgttctaaggttgcagtaggctagatagggggtgtttgaaaatgtcaatcaagga 291
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cagcctgttctaaggttgcagcaggctagatagggggtgtttgaaaatgtcaatcaagga 492
Query: 292 gctcctcctccaatcacagtgctgtctgccagacttctgaagcacctctgacttatcaaa 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gctcctcctccaatcacagtgctgtctgccagacttctgaagcacctctgacttatcaaa 552
Query: 352 cgtcaggtgaactggacgtttgtatatctacatattatttcctgtatctggctacttagc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgtcaggtgaactggacgtttgtatatctacatattatttcctgtatctggctacttagc 612
Query: 412 acatttcagggttgtcactttattaatattttctactatagtttcttcagcaggaagttg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acatttcagggttgtcactttattaatattttctactatagtttcttcagcaggaagttg 672
Query: 472 gatacaaagcttccaagctatacatcttcttttctctgaaactaagttatacattgtaag 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gatacaaagcttccaagctatacatcttcttttctctgaaactaagttatacattgtaag 732
Query: 532 tatagggagatctatatttccctgggtgctggggtttgtaatgacctataca 583
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 733 tatagggagatctatatttccctgggtgctggggtttgtaatgatctataca 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space: 558102
Effective search space used: 558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
