NAAAGTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATCTTTTCCCATAACTGATATGGAATGTGTTATGCATCT
TAAGCAAATTTGTTAGAAGGAGAGGCATGTCTTGCCCCAACTGCCTTCTT
GCAAGGAAAGCTCTGTGGAGGCTTTGACTCTGAGGAGGCGGGACAGGTTG
AGCCCTGCCACTTTGTGCACGTGCCAATTAGGCTGCATGGTTAATCCTCC
AAGCCACAGCCCCTCTCCTTACTGCCTCTGAGAAAACAAACAAAATGAGG
GAAAGGGAGAGAAAGTGATGGTGGGAGTAAGAAGCATTTTCCCTTTGAGA
GAGTACAGAATTTGGGTGCCCATTAGCAATTAGTACCAGAGAGAGGACAG
GAAGTCCACTGGAGGGAGTGGCAGTATCTCTTGCAGGCTTGAGTTTACCT
TCTTGCAGACACCACTACTACATTTGTCTCCAATAGCTCTTTGCCTTCCT
GCATACAGCAGACCTTCGCATTTCCTGGCTTCCCAAGAGCCTGCAAAGAA
GACATTCACCCATCCCATTCTCGAAATGGGAAAACAGAGGCTCAGGGGCT
CAGTGATTTATTTAAAGTGCAGCATAAGCAAGCAAAGAAGCCAACAGGAG
ATAAGAGTTTGCCTAACTCCCCAGTCAATTTTCAGTTCCCCAGATAACAC
AGAGCCTAAATAAACCTACATCAACACCATATGGTACCAGGCAAGCTTGC
GGA

NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGATAACAACAGGCATGT
ATTGGTCCACCTTATATTGCATAGTTGAGCTCCATTTGTTGGGACTCCAT
AGAGAGAAACACACAAAAACAAAAACAAAACTGGTGGTATGCTTGCAGCA
TCTTGCTGCTTCCTTGGACTTGGGCCAAGTGGCAAAGTGATGTCAGCTGA
GACAGACTCTCGTGGAGTTTTGCTAAGACAGACACACATGCTGAGGCAAG
ACATGTGATGAGGTAAGACCCATTAAGGACACATGGTGCTTGGAGGGATT
AAAAATAGGACTCAAGGGACTGTGAGAGAGGCTTATTGGTAGATCTTGCT
GTACAATGCTTCTTGGTCTCTCATCTTCACTGATCTTTACTTCGCTGAGA
GAGGCATGGCAGTGAACTTCTAGTGTTCCTGCTGGTCCCAATGTCTCCTG
CTGAGTCATGCAGATTCAGCTGAGGCCTGCCTGTTCCTCCTACGTCATAC
TGCTATCCTAACACCACTGAACTGGACCGCTGGTCCATGAAGTGTCTGCA
AGTGGATCAAGCTGCCACTGCTGACCTGTGAACTGAACTGCTGATTTCCT
GCCACCACAGATGGGATCTGCTCCAAAAAACTATTTCTAAACAGGTCCAC
TTCGCCCATATCCTAGTGACTTTCTTTTCCACTACCCATGGTGGGTGGTT

Query= MSMg01no543_f05.b1 MSMg01no543_f05.b1 CHROMAT_FILE:
MSMg01no543_f05.b1 PHD_FILE: MSMg01no543_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:39 2005
         (575 letters)



>mm_chr13_108297594_108298569
          Length = 976

 Score = 1000 bits (517), Expect = 0.0
 Identities = 559/575 (97%), Gaps = 7/575 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcttttc-ccataactgatatggaatgtgttatgcatcttaagcaaatttgtt 63
           ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 689 gaattcatc-tttcaccataactgatatggaatgtgttatgcatcctaagcaaatttgtt 631

                                                                       
Query: 64  agaaggagaggcatgtcttgccccaactgccttcttgcaaggaaagctctgtggaggctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 agaaggagaggcatgtcttgccccaactgccttcttgcaaggaaagctctgtggaggctt 571

                                                                       
Query: 124 tgactctgaggaggcgggacaggttgagccctgccactttgtgcacgtgccaattaggct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tgactctgaggaggcgggacaggttgagccctgccactttgtgcacgtgccaattaggct 511

                                                                       
Query: 184 gcatggttaatcctccaagccacagcccctctccttactgcctctgagaaaacaaacaaa 243
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gcatggttaaccctccaagccacagcccctctccttactgcctctgagaaaacaaacaaa 451

                                                                       
Query: 244 atgagggaaagggagagaaagtgatggtgggagtaagaagcattt---tccctttgagag 300
           ||||||| |||||||||||||||||||||||||||||||||||||   |||||||  |||
Sbjct: 450 atgaggggaagggagagaaagtgatggtgggagtaagaagcatttctctcccttt--gag 393

                                                                       
Query: 301 agtacagaatttgggtgcccattagcaattagtaccagagagaggacaggaagtccactg 360
           || ||||||||||||||||||  | |||||||||||||||||| ||||||||||||||||
Sbjct: 392 agcacagaatttgggtgcccaccatcaattagtaccagagagaagacaggaagtccactg 333

                                                                       
Query: 361 gagggagtggcagtatctcttgcaggcttgagtttaccttcttgcagacaccactactac 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gagggagtgtcagtatctcttgcaggcttgagtttaccttcttgcagacaccactactac 273

                                                                       
Query: 421 atttgtctccaatagctctttgccttcctgcatacagcagaccttcgcatttcctggctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atttgtctccaatagctctttgccttcctgcatacagcagaccttcgcatttcctggctt 213

                                                                       
Query: 481 cccaagagcctgcaaagaagacattcacccatcccattctcgaaatgggaaaacagaggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 cccaagagcctgcaaagaagacattcacccatcccattctcgaaatgggaaaacagaggc 153

                                              
Query: 541 tcaggggctcagtgatttatttaaagtgcagcata 575
           |||||||||||||||||||||||||||||||||||
Sbjct: 152 tcaggggctcagtgatttatttaaagtgcagcata 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 976
Length adjustment: 10
Effective length of query: 565
Effective length of database: 966
Effective search space:   545790
Effective search space used:   545790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)