Query= MSMg01no543_h18.b1 MSMg01no543_h18.b1 CHROMAT_FILE:
MSMg01no543_h18.b1 PHD_FILE: MSMg01no543_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:52 2005
(710 letters)
>mm_chr13_21264852_21265961
Length = 1110
Score = 1323 bits (684), Expect = 0.0
Identities = 702/708 (99%)
Strand = Plus / Plus
Query: 3 cggaattcagaaatcctgaggatccttgcaagctcaggtctggctcagagccattcatcc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cggaattcagaaatcctgaggatccttgcaagctcaggtctggctcagagccattcatcc 262
Query: 63 gggtcacgaaggaacaagtagctccagctgttccgagatggtgtgcacaagcgcccagtt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gggtcacgaaggaacaagtagctccagctgttccgagatggtgtgcacaagcgcccagtt 322
Query: 123 ggtggagcttgcaggggtgggaagctaaagagcagactagattagcaagtaaatctagtt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggtggagcttgcaggggtgggaagctaaagagcagactagattagcaagtaaatctagtt 382
Query: 183 tatgaacactggctgcagtgcaaaccagagagtggcagaagcctgagctatgaaaagtaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatgaacactggctgcagtgcaaaccagagagtggcagaagcctgagctatgaaaagtaa 442
Query: 243 ctgcacaagtacgaaaaagctgcaagatcaaggattaaagactagaaacactggaaggaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgcacaagtacgaaaaagctgcaagatcaaggattaaagactagaaacactggaaggaa 502
Query: 303 aaagtcaagtgtgagacgaggaaatgtcagtacagagctcagctcaaatcccaggtcctt 362
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaagtcaagtgtaagacgaggaaatgtcagtacagagctcagctcaaatcccaggtcctt 562
Query: 363 tgctgccacagacttgcagacctgaccatctccaggcaaatgcagagctgcccattcttg 422
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 563 tgctgccacagacttgcagacctgaccatcttcaggcaaatgcagagctgcccattcttg 622
Query: 423 gaaattggtatcatagtaaaacaagacagctttccgaagaaagggttgggtatcagtgtg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaaattggtatcatagtaaaacaagacagctttccgaagaaagggttgggtatcagtgtg 682
Query: 483 accccaaagaatctctaggttatacagcatccagaatcagagttttcatttctaatctta 542
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 actccaaagaatctctaggttatacagcatccagaatcagagttttcatttctaatctta 742
Query: 543 aatatgaacaagaaccagggaaagcaggtatttgtgaaaacatttctacaataaagaaaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aatatgaacaagaaccagggaaagcaggtatttgtgaaaacatttctacaataaagaaaa 802
Query: 603 aagtaaatacagtaggggattggaaaggacctaagaaaagacaaatacaacacgagaaga 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aagtaaatacagtaggggattggaaaggacctaagaaaagacaaatacaacacgagaact 862
Query: 663 tggagatgatgttattgttgttgttgttggaatcatcatctcctcgaa 710
||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 863 tggagatgatgttattgttgttgttcttggaatcatcatctcctcgaa 910
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space: 770000
Effective search space used: 770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no543_h18.g1 MSMg01no543_h18.g1 CHROMAT_FILE:
MSMg01no543_h18.g1 PHD_FILE: MSMg01no543_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:52 2005
(675 letters)
>mm_chr13_21334610_21335684
Length = 1075
Score = 1116 bits (577), Expect = 0.0
Identities = 632/675 (93%), Gaps = 38/675 (5%)
Strand = Plus / Minus
Query: 1 ctttagactttaccctgtcccacgccctcctgccctgcgacagtgagcagaccagatgca 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 ctttagactttaccctgttccacgccctcctgccctgcgacagtgagcagaccagatgca 927
Query: 61 gaagaaacaccaccaccaccacaccaccaccaccaccaccaccaccaccaccaccaccac 120
||||||| |||||||||||||||
Sbjct: 926 gaagaaa--------------------------------------caccaccaccaccac 905
Query: 121 caccaccaccaccaccaccaccaccgccagttgtggcgtgcgcttctgagttgcttctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 caccaccaccaccaccaccaccaccgccagttgtggcgtgcgcttctgagttgcttctga 845
Query: 181 gacccacacagaaatatgaaggtggcatttcagaccctgcggactgcaaagtgacttaaa 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 844 gacccacacagaaatatgaaggtggcatttcggaccctgcggactgcaaagtgacttaaa 785
Query: 241 cgtttgcaataacctcctcacccctagcccccaatcccccgaacagattctacaaccgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 cgtttgcaataacctcctcacccctagcccccaatcccccgaacagattctacaaccgca 725
Query: 301 gctggcacagaagtataaagaatggatgtttcttgctatttctaaaacttcgggtttcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gctggcacagaagtataaagaatggatgtttcttgctatttctaaaacttcgggtttcct 665
Query: 361 cacatggccccatgagtcttttatatttcctttcatttcaaagttactgccacaagcgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cacatggccccatgagtcttttatatttcctttcatttcaaagttactgccacaagcgct 605
Query: 421 gagaagactagccgctgttcctatggcggggggaaaaattgacatgggaaacatctttcc 480
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gagaagactagcccctcttcctatggcggggggaaaaattgacatgggaaacatctttcc 545
Query: 481 ttgggaaggcaccttaaacactggtgtctcagaggaaagactggtacaccgaatcaaggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttgggaaggcaccttaaacactggtgtctcagaggaaagactggtacaccgaatcaaggt 485
Query: 541 tgtgtccggaagtcctgttcgttcgcgctgtgggttacaggtgaaggagacatggagggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgtgtccggaagtcctgttcgttcgcgctgtgggttacaggtgaaggagacatggagggg 425
Query: 601 acaggtggaaggaaggtcgggctcatggtgcggggccaagtggttaggttaactttgtaa 660
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 424 acaggtggaaggaaggtcgggctcagggtgcggggccaagtggttaggttaactttgtaa 365
Query: 661 acgcatcgagattct 675
|||||||||||||||
Sbjct: 364 acgcatcgagattct 350
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
