Query= MSMg01no543_l09.b1 MSMg01no543_l09.b1 CHROMAT_FILE:
MSMg01no543_l09.b1 PHD_FILE: MSMg01no543_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:10 2005
(699 letters)
>mm_chr13_111681264_111682361
Length = 1098
Score = 1208 bits (625), Expect = 0.0
Identities = 679/697 (97%), Gaps = 3/697 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaagacttttgtgagcttctacctaaatacttaatgaatatgccagggtcttat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 ggaattcaagacttttgtgagcttctacctaaatacttaatgaatatgccagggtcttat 839
Query: 64 tattttccaggcagggtcctaatcttgccctaggcactttttcttcattagaaatttaac 123
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tattttccagccagggtcctaatcttgccctaggcactttttcttcattagaaatttaac 779
Query: 124 ctaccccagagcatggatactttgataattaaattttagttctggtagtcagagttttag 183
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 778 cttccccagagcttggatactttgataattaaattttagtcctggtagtcagagttttag 719
Query: 184 gccctcttactacagaaaatggtactttttgtgtgtgttatccaaactgccctacacttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gccctcttactacagaaaatggtactttttgtgtgtgttatccaaactgccctacacttt 659
Query: 244 ccatgattgctttaaatgctttgaaaatttctgccagtttttcaatctttcttctagaaa 303
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ccctgatttctttaaatgctttgaaaatttctgccagtttttcaatctttcttctagaaa 599
Query: 304 aacaaatttagaaaatgaccataacatgttattgtcttgcagtcccct-gtccactttac 362
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 598 aacaaatttagaaaatgaccataacatgttattgtcttgcagt-ccctcgtccactttac 540
Query: 363 tttttaagatacgtgcagagccaacttgtgcttttcattaatgtttataccatcccacct 422
||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||
Sbjct: 539 tttttaagatacgtgcagagccaacctgtgcttttcactaat-tttataccatcccacct 481
Query: 423 caccagtgagatgtcgggctttccttgtgtgcctgggctgtctgtgtccatcaatgaagc 482
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 caccagtgaggcgtggggctttccttgtgtgcctgggctgtctgtgtccatcaatgaagc 421
Query: 483 agcaactggtccagtttcaagccccaccttattttgtatcttctcagagaactatgtcta 542
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agcaactggtctagtttcaagccccaccttattttgtatcttctcagagaactatgtcta 361
Query: 543 cctgggtttaccaggaagtagatgccaaggattagactgtgtcttatacataatacaaaa 602
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 360 cctgggtttaccaggaagtagatgccgaggattagactgtgtcttatacataatacaaaa 301
Query: 603 aaggctttgtggtttgctacttgtggaagggagagggtatagacagaattgggacaaagg 662
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 300 aaggctttgtggtttgctacttgtggaagagagaaggtatagacagaattgggacaaagg 241
Query: 663 caaagttaaattgaaacaggttcagccaagaccacag 699
|||||||||||||||||||||||||||||||||||||
Sbjct: 240 caaagttaaattgaaacaggttcagccaagaccacag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1098
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1088
Effective search space: 749632
Effective search space used: 749632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_l09.g1 MSMg01no543_l09.g1 CHROMAT_FILE:
MSMg01no543_l09.g1 PHD_FILE: MSMg01no543_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:10 2005
(645 letters)
>mm_chr13_111555745_111556789
Length = 1045
Score = 1133 bits (586), Expect = 0.0
Identities = 632/648 (97%), Gaps = 3/648 (0%)
Strand = Plus / Plus
Query: 1 aggtcctcttgaagagcagtgagcatccttaattgatgaaccatctcttcaacaaaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aggtcctcttgaagagcagtgagcatccttaattgatgaaccatctcttcaacaaaaatt 257
Query: 61 acattctttacggttaaagttttacataacagattgattaattgatctttttgagcttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acattctttacggttaaagttttacataacagattgattaattgatctttttgagcttgt 317
Query: 121 cccttgtcaaattatgtgaaacctaagtttgcttgagaattcattgaagaggcataaaag 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 318 cccttgtcaaattatgtgaaacccaagtttgcttgagaattcattgaagaggcataaaag 377
Query: 181 actgctcagtagtcgaagctcctgccgcacaaggcagggaagtagagtttggatcctca- 239
||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct: 378 actgctcagtagtcgaagctcctgcagcacaaggcagggaaatagagtttgggtcctcag 437
Query: 240 aatccaagaacctagtgagtatgggaacttctatgttatttataccccagaaagtgaaca 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aacccaagaacctagtgagtatgggaacttctatgttatttataccccagaaagtgaaca 497
Query: 300 taagacatcttcagaggaaactggctaagtggactagctgtatcaataaactctaggttt 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 498 taagacatcttcagaggaaactggataagtggactagctgtatcaataaactctaggttt 557
Query: 360 cattgagaggtctggcttcaaaaactagtgtggaagagtgatggagaatgactcaggata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cattgagaggtctggcttcaaaaactagtgtggaagagtgatggagaatgactcaggata 617
Query: 420 tacacacatat--gtgcatctgcatgtaccaacatatatgcatgcatgcatgcatacata 477
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 618 tacacacatatatgtgcatctgcatgtaccaacatatatgcatgcatgcatacatacata 677
Query: 478 catgtacatacacatgagaggaagtaaagagaactcatttgaggtatctatagccacgca 537
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 678 catgtacatacacatgagaggaagtaaagagaactcatttaaggtatctatagccacgca 737
Query: 538 tctctctattccaagtaaaataggtaggttcaggtgtgatatgttctccttaatagaaac 597
|||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 738 cctctctattcaaagtaaaataggtaggttcaggtgggatatgttctccttaacagaaac 797
Query: 598 ttctaatagaaacatcagttggctcatgctcatttttaaactccctcc 645
|||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 798 ttctaatagaaacatcagttggctcatgctcattttaaaactccctcc 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
