BAC Information

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BAC

Clone NameMSMg01-544A10
Chromosome13 (Build37)
Map Location 112,662,632 - 112,663,103
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1
Downstream geneLOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544A10.T7 (MSMg01no544_a10.b1)MSMg01-544A10.TJ (MSMg01no544_a10.g1)
ACCAG609421AG609422
length837749
length of high quality
(start - end)		87 (53 - 139)540 (78 - 617)
definitionCHROMAT_FILE: MSMg01no544_a10.b1 PHD_FILE: MSMg01no544_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:34 2005CHROMAT_FILE: MSMg01no544_a10.g1 PHD_FILE: MSMg01no544_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGTGATGATTTACTGATAGCACCCTCTTCAAGCTTTG
TATTTTTATAAATATCCTTTTCCAAAGGTTATACTGTNANNTAAAGGCNT
TAANAAGNNNAAAAANAATATTTTAAAAACCCCCAAAGGGGTTTTTTTTT
GGGGGAAAAAACCCAAACCCCCTTTTAAAAAAAAAAAAATTTTTTTTTTT
TTTTTTTTATAAAAAAAAATTTTTTTTTCTCTCCCCCCCCTTTACCAAAA
CCACCTGTACAAAAAAAAAAGACCGTCCTTTTTTCTTTTTATTAAATAAA
AAAAAAAAAATGGACTCCCTGCCTTCCCATAAATATTTTTATATTCTCTC
CTACCAAAAAAGAAATACTATTTTTTTTTTTTCTCCCCCTCCCACCACAA
CAATAAATTGATTACGTACTTATGTATTTTATGTCTTTTACAAATACATT
TTATACCGACTCATGCCTATTACCTCCTTTCCTCTCTAACTCAACCAAAT
AAGTGTGGGAGATGTATATGTAATAACTCATATACTTTTTCTTTCGTTGT
TTTTTGTGGGGGGGGTCCCCCTTTTATACACAATACTCCCACTTATTTAG
CGCAATCTTATTTGTAAGTAAAAAAAAAAAAAAGCACAACTCTTATTCTT
CTTCGTTCCCACAGATTGATTTCTTATATTTTCGTCCGCTTTTTCATTTC
TCCTTTTGTTCTCTGCTGATTACTCCATACACTAATAATCGATACACCTA
TATATATTCCACATTATCATATTTTTTTTACCTCCCG

GAGACGAGGCAGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGCATGCCTCTGCTATAGAT
AGGGAGCAAGCCTACCCCCTACCCTAGGGACATGTGTTAACTCCTTTAAT
AAGAAGAAGGTTAGGAGCAAAGATAACCATCTTAAAAGAGATGCTTCGGC
CGGGCAGTGGTGGCGCATGCCTTTAACCCCAGCCCTTGGGAGACAGAGGC
AGGCAAATTTCTGAGATCGAAGGCAGCCTGGTCTACAGAGTGAGTTCCAG
GAGAGCCAGGGCTACACAGAGAAACCCTATCTCGAAAAACCAAGAGATGC
CTCTCGGAAGAAGGCTCCCTCCAAAGCCACAAAGAACTCAACCAGGAAGA
TTTTAAACAAACTGTCATCTGGCCACTTTGGGGAGAATCCTACAACAATA
GTTGAACATCTGCTCTTTGCCAGGCACTTCTTGGCCAGAATGCAGAATAA
GCACCCATTACCACAGCTGTGGACATCACTTGTCTTTCGGCGGGAGCGAA
AGTCAATACCTTGGAAGCGCAGAGGCTACCCAGGCTCTCAGTTCAGGCTG
CCCCTAGAATCACTTTGAAAGTTTTCTTTATAAGCGACAGTTGCCTGTCT
CTGTCCGTAGAGACTGTGACTTTCTCTGCCGGGGAAAGCAGTCTGTCTGG
GAATGTTTTGAAAGCACCACAGGTGAGACTTCACACAGCTGGACTGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_a10.g1 MSMg01no544_a10.g1 CHROMAT_FILE:
MSMg01no544_a10.g1 PHD_FILE: MSMg01no544_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:34 2005
         (540 letters)



>mm_chr13_112662164_112663103
          Length = 940

 Score =  882 bits (456), Expect = 0.0
 Identities = 468/472 (99%)
 Strand = Plus / Minus

                                                                       
Query: 69  ttaataagaagaaggttaggagcaaagataaccatcttaaaagagatgcttcggccgggc 128
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 940 ttaataagaagaaggttaggagcaaagataaccatcttaaaagatatgcttcggccgggc 881

                                                                       
Query: 129 agtggtggcgcatgcctttaaccccagcccttgggagacagaggcaggcaaatttctgag 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 agtggtggcgcatgcctttaaccccagcccttgggagacagaggcaggcaaatttctgag 821

                                                                       
Query: 189 atcgaaggcagcctggtctacagagtgagttccaggagagccagggctacacagagaaac 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 atcgaaggcagcctggtctacagagtgagttccaggagagccagggctacacagagaaac 761

                                                                       
Query: 249 cctatctcgaaaaaccaagagatgcctctcggaagaaggctccctccaaagccacaaaga 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cctatctcgaaaaaccaagagatgcctctcggaagaaggctccctccaaagccacaaaga 701

                                                                       
Query: 309 actcaaccaggaagattttaaacaaactgtcatctggccactttggggagaatcctacaa 368
           |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 700 actcaaccaggaagcttttaagcaaactgtcatctggccactttggggagaatcctacaa 641

                                                                       
Query: 369 caatagttgaacatctgctctttgccaggcacttcttggccagaatgcagaataagcacc 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 caatagttgaacatctgctctttgccaggcacttcttggccagaatgcagaataagcacc 581

                                                                       
Query: 429 cattaccacagctgtggacatcacttgtctttcggcgggagcgaaagtcaataccttgga 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cattaccacagctgtggacatcacttgtctttcggcgggagcgaaagtcaataccttgga 521

                                                               
Query: 489 agcgcagaggctacccaggctctcagttcaggctgcccctagaatcactttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 520 agcgcagaggctacccaggctctcagttcaggctgcccctagaatcattttg 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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