Query= MSMg01no544_a13.b1 MSMg01no544_a13.b1 CHROMAT_FILE:
MSMg01no544_a13.b1 PHD_FILE: MSMg01no544_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:34 2005
(616 letters)
>mm_chr13_80490677_80491693
Length = 1017
Score = 1112 bits (575), Expect = 0.0
Identities = 605/615 (98%), Gaps = 1/615 (0%)
Strand = Plus / Minus
Query: 3 ggaattccttggtgttcacatctggaatgaaaacttatggagcagtatttgctttagaat 62
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ggaattccttggtgttcagatctggaatgaaaacttatggagcagtatttgctttagaat 758
Query: 63 cacctgaaaaaatttattgcagagaagatggaaagctcacaccaaaggaaaaagagaaca 122
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 cacctgaaaaattttattgcagagaagatggaaagctcacaccaaaggaaaaagagaaca 698
Query: 123 tgaagaaagggcttaagaacaagacaagacacagtcaagaaggagaaattcaagcatagg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tgaagaaagggcttaagaacaagacaagacacagtcaagaaggagaaattcaagcatagg 638
Query: 183 agtaagaatgcagacagaatataacaagaagaaagggtggcttcaaaggtgttttcccag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 agtaagaatgcagacagaatataacaagaagaaagggtggcttcaaaggtgttttcccag 578
Query: 243 gaaaaccatgagaacgaaagtcaaggctaagtaaggggagcaaatcagcccaatagaatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gaaaaccatgagaacgaaagtcaaggctaagtaaggggagcaaatcagcccaatagaatt 518
Query: 303 gagcccttaatttatgaacttttaaatatgaggtcaagagagagcttacaccagattgga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gagcccttaatttatgaacttttaaatatgaggtcaagagagagcttacaccagattgga 458
Query: 363 gctgagattatttagtcaaaactgatcaaatgatcataaatggatgtatgaaaacagatg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gctgagattatttagtcaaaactgatcaaatgatcataaatggatgtatgaaaacagatg 398
Query: 423 aaagtcgataaaatctcacaataatgtagttttatatttaagttttactatacagtattt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaagtcgataaaatctcacaataatgtagttttatatttaagttttactatacagtattt 338
Query: 483 ttatccactaattctcaaacaaaattatctttactatatctccgatttccttaattttgt 542
|||| ||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 337 ctatctactaattctgaaacaaaattatctttaatatatctctgatttccttaattttgt 278
Query: 543 cattgatagtcatttaaagacgataacttatagcactaagttataatgattgacatt-ga 601
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct: 277 cattgatagtcatttaaagatgataacttatagcactaagtgataatgattgacattaga 218
Query: 602 aataatttattggtt 616
|||||||||||||||
Sbjct: 217 aataatttattggtt 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1017
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1007
Effective search space: 610242
Effective search space used: 610242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_a13.g1 MSMg01no544_a13.g1 CHROMAT_FILE:
MSMg01no544_a13.g1 PHD_FILE: MSMg01no544_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:34 2005
(589 letters)
>mm_chr13_80430013_80431003
Length = 991
Score = 1089 bits (563), Expect = 0.0
Identities = 581/587 (98%), Gaps = 2/587 (0%)
Strand = Plus / Plus
Query: 1 ctgaatatgttcatatcttctgtggatatgatacattcacagggttaataattcagttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaatatgttcatatcttctgtggatatgatacattcacagggttaataattcagttat 260
Query: 61 tgtcaaatcaaatagtttaatcatttttattgaggtgtttagttcttataaggtcaatat 120
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcaaatcaaatagtttaatcattatgattgaggtgtttagttcttataaggtcaatat 320
Query: 121 actcagaaaataatttaattttgagtacattatcaaaacataaactggcaaccaagcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcagaaaataatttaattttgagtacattatcaaaacataaactggcaaccaagcctt 380
Query: 181 ttaataaacataatgtaagagtcagatttctattcttctaatgtagagtttttttt-aag 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ttaataaacataatgtaagagtcagatttctattcttctaatgtagagtttttttttaag 440
Query: 240 atacagtataattgaagtataaaaacaaaagtttccttataaagcaattttaaaacacaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacagtataattgaagtataaaaacaaaagtttccttataaagcaattttaaaacacaa 500
Query: 300 atgtatgttaaaagtgggaaacttgcattactgtcagttgcagagatcagtttagtgaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtatgttaaaagtgggaaacttgcattactgtcagttgcagagatcagtttagtgaaa 560
Query: 360 gtaaaccaaatccagattccttggttgcttctcttctctctcctgatgtcagaaaagaaa 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaagccaaatccagattccttggttgcttctcttctctctcctgatgtcagaaaagaaa 620
Query: 420 gggtagataattaaaactacctagaatgtaatggggctaatgactcaggatcttaaagac 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 gggtagataattaaaactacctagaatgtaacggggctaatgactcaggatcttaaagac 680
Query: 480 tacacagggctctcatttgtccatttttgaggaaataaaaa-tattaatctgaatatata 538
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 tacacagggctctcatttgtccatttttgaggaaataaaaaatattaatctgaatatata 740
Query: 539 tagagacagaacagtgctctaaagcccttactgcttttcaagaggat 585
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagagacagaacagtgctctaaagcccttactgcttttcaagaggat 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 991
Length adjustment: 10
Effective length of query: 579
Effective length of database: 981
Effective search space: 567999
Effective search space used: 567999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
