Query= MSMg01no544_p04.b1 MSMg01no544_p04.b1 CHROMAT_FILE:
MSMg01no544_p04.b1 PHD_FILE: MSMg01no544_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:47 2005
(583 letters)
>mm_chr13_97954272_97955254
Length = 983
Score = 630 bits (326), Expect = 0.0
Identities = 461/580 (79%), Gaps = 114/580 (19%)
Strand = Plus / Plus
Query: 5 gaattcattagcattcatgttggcatccacaatgcatggatcttacaggttccaatgcaa 64
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcattagcaggcatgttggcatccacaatgtatggatcttacaggttccaatgcaa 264
Query: 65 atgagtaaaaaaaaa-tttttttcttaagggaggaaaagacacttggctaaatatgagca 123
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgagtaaaaaaaaaattttttt-ttaagggaggaaaagacacttggctaaatatgagca 323
Query: 124 ttgaaggctgtctaggtgaagccaaacttttgcacaagtgagataagtctggggtttgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgaaggctgtctaggtgaagccaaacttttgcacaagtgagataagtctggggtttgat 383
Query: 184 tcagaataacaggcggaggggaagggtagagttgtcacggactggcggctggagctgcgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcagaataacaggcggaggggaagggtagagttgtcacggactggcggctggagctgc-- 441
Query: 244 actgagccaatggaactgttctctccccccccccccgtgtttgaaagtgcacatcaaagg 303
Sbjct: 441 ------------------------------------------------------------ 441
Query: 304 aggaaagcatcagtgagcgccaagcactgcagcctagagtggacacagcctcagagctgg 363
||||||||||
Sbjct: 442 --------------------------------------------------tcagagctgg 451
Query: 364 aactgtgcccatagacaggagtccggacaaggcatgtagcttctctggatgtcagctgga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aactgtgcccatagacaggagtccggacaaggcatgtagcttctctggatgtcagctgga 511
Query: 424 attgtctactacagggagatcaaactgagacccaggggtgagctccccagctgcactggg 483
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 attctctactacagggagatcaaactgagacccaggggtgagctccccagctgcactggg 571
Query: 484 cctgagcaatccatctgaacacaacagacacccccagcacgagggaggaagcagggggtc 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cctgagcaatccatctgaacacaacagacacccccagcacgagggaggaagcagggggtt 631
Query: 544 cactttcaaggtcatcctcagctacatggcaagttcaagg 583
||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cactttcaaggtcatcctcagctacatggcaagttcaagg 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_p04.g1 MSMg01no544_p04.g1 CHROMAT_FILE:
MSMg01no544_p04.g1 PHD_FILE: MSMg01no544_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:47 2005
(573 letters)
>mm_chr13_98105379_98106351
Length = 973
Score = 998 bits (516), Expect = 0.0
Identities = 558/572 (97%)
Strand = Plus / Minus
Query: 1 agtatcaggaatcaaatcaaggattcacatatgctagacaagcactatcccaactgaacc 60
|||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct: 597 agtatcaggaatcaaatcaaggcttcacatacgctagacaaccactatcccaactgaacc 538
Query: 61 acacctccagccccatttacttacttgaaatgcctagtttgaatgtaagtagaatgatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 acacctccagccccatttacttacttgaaatgcctagtttgaatgtaagtagaatgatct 478
Query: 121 tgtcaaagagtagtatcattttagagctattccccagcaatccaagtcacatgacccggg 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 477 tgtcaaagagtagcatcattttagagctattccccagcaatccaagtcacatgacctggg 418
Query: 181 ctccttccacctgagctacaagtatgactagatggctctccaggcaatgctctaatgaag 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 417 ctccttccacctgagctacaagtatgactagatggctctgcaggcaatgctctaatgaag 358
Query: 241 cgggcaccccaataagacacagaaaagtgcaggagttgagacttctctgggtgacaaacc 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cgggcaccccaataagacgcagaaaagtgcaggagttgagacttctctgggtgacaaacc 298
Query: 301 acgacccttcatcaaacctacagcctcctcttcctccttcacctccccttcttcctgatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 acgacccttcatcaaacctacagcctcctcttcctccttcacctccccttcttcctgatc 238
Query: 361 ctcttccccctctttcttcctcatcttcttccttccccttcatcatcttcttcctcttcc 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 237 ctcttccccctctttcttcctcatcttcttccttccccttcatcatcctcttcctcttcc 178
Query: 421 ccctcctcctcttcctccccctcctcctccttcttcctgtagatagaggcactcagttta 480
|| ||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 177 ccttcctcctctacctccccctcctcttccctcttcctgtagatagaggcactgagttta 118
Query: 481 ctgactcctatggacatagagctgatcccaaccttctcccagggatgctcaacacacact 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 117 ctgactcctatggacatagagctgatcccaaccttctcccagggatgctcgacacacact 58
Query: 541 atggatcctttctgcctcaaattcacctctaa 572
||||||||||||||||||||||||||||||||
Sbjct: 57 atggatcctttctgcctcaaattcacctctaa 26
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
