BAC Information

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BAC

Clone NameMSMg01-545O13
Chromosome13 (Build37)
Map Location 7,800,758 - 7,801,104
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667611, EG623516
Downstream geneLOC791083, LOC382722, Adarb2, EG666941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545O13.T7 (MSMg01no545_o13.b1)MSMg01-545O13.TJ (MSMg01no545_o13.g1)
ACCAG610858AG610859
length732739
length of high quality
(start - end)
697 (36 - 732)448 (65 - 512)
definitionCHROMAT_FILE: MSMg01no545_o13.b1 PHD_FILE: MSMg01no545_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:01 2005CHROMAT_FILE: MSMg01no545_o13.g1 PHD_FILE: MSMg01no545_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATAT
CTATTTGATCCTCAATTCCCCAATTCAACTCATCCAAGTGCCACACACTT
CCCCTCTGTTCTAACATTTTATTTTCCCTACAAAAGCTAATTTGTGCCAT
CCAAGTAGTTTGGGTGTGTGGTTGACCTAAACTCTTTGAAAAAAAATCCT
TCTTCCCCCTACAGCTAACACTTTTCAATTGCTCCTATACTACGTGTAGA
ACCCAGTGCCTGACTCCCTTTTTCATGCTGGAATGTAGTCTAGCTTAGGT
TTCCATAGGTCTTGTGTATGGTGTCAGATTCCCTGATGTGTTCAAAAGGC
ACTGTTTCTTCATAGGTGTCTATATCCACTGGCTCTTACACTATTTTTCT
CCTTCTTAATCAATTATCCCTGTGTCTTTGGAGGAGGGATAATGGTTTAT
ATGTTCTGTTTATGGCTGAGAATTCTGCAGTCTCTCATTTTCTGTACCTT
GGCCAGCTGTGGGTCTGTATGCTGTTCAGCATCGATTGCAAACAGAAGCT
TCTGCATTGAAGATTGAGAGAAAACATATTCGAATAGTAAGTCACTGGAA
TTGGTTTCCTATCATTTCTGTCTGACATAATAATTGTAAGTGGGTTCTCT
CCTAAAATGTTTACACACATATATATGAAAAAGAAAACTGTTTATTAATC
AGAATTTTCAGTTTTAAACATTTGGCAATTGC
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGATATGC
TTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGG
GCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGTTCCTGGCTTCTG
TTAGTAGGATTCTTATGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTT
AGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTT
ACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGT
GGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTAC
AGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAAC
AGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTG
TCTGGAGTCGAAGATGTAGCAGCCTCAGAAGCTCTGTGGCTCTTGCCGGG
AAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGCCCCAGAATCTCTG
CGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCTGTATTCCACACGG
TCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGGAGCCAGAAGGCTTCC
GCCGGCGCCTGTGGCACAAACCTCTCATGGCAGGCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_o13.b1 MSMg01no545_o13.b1 CHROMAT_FILE:
MSMg01no545_o13.b1 PHD_FILE: MSMg01no545_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:01 2005
         (697 letters)



>mm_chr13_7800758_7801853
          Length = 1096

 Score =  644 bits (333), Expect = 0.0
 Identities = 345/349 (98%), Gaps = 3/349 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccata-tctatttgatcctcaattccccaattcaactcatccaagtgccacacac 63
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gaattccatattc-atttgatcctcaattccccaattcaactcatccaagtgccacacac 289

                                                                       
Query: 64  ttcccctctgttctaacattttattttccctacaaaagctaatttgtgccatccaagtag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttcccctctgttctaacattttattttccctacaaaagctaatttgtgccatccaagtag 229

                                                                       
Query: 124 tttgggtgtgtggttgacctaaactctttgaaaaaaaatccttcttccccctacagctaa 183
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tttgggtgtgtggttga-ctaaactctttgaaaaaaaatccttcttccccctacagctaa 170

                                                                       
Query: 184 cacttttcaattgctcctatactacgtgtagaacccagtgcctgactccctttttcatgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 cacttttcaattgctcctatactacgtgtagaacccagtgcctgactccctttttcatgc 110

                                                                       
Query: 244 tggaatgtagtctagcttaggtttccataggtcttgtgtatggtgtcagattccctgatg 303
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tggaatttagtctagcttaggtttccataggtcttgtgtatggtgtcagattccctgatg 50

                                                            
Query: 304 tgttcaaaaggcactgtttcttcataggtgtctatatccactggctctt 352
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  tgttcaaaaggcactgtttcttcataggtgtctatatccactggctctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1096
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1086
Effective search space:   746082
Effective search space used:   746082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)