Query= MSMg01no546_h01.b1 MSMg01no546_h01.b1 CHROMAT_FILE:
MSMg01no546_h01.b1 PHD_FILE: MSMg01no546_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:44 2005
(690 letters)
>mm_chr13_8452529_8453617
Length = 1089
Score = 1183 bits (612), Expect = 0.0
Identities = 651/664 (98%), Gaps = 4/664 (0%)
Strand = Plus / Minus
Query: 29 aagaagcttccatctcagtcagatgatgatggcacacacctttaaacctagcaattggag 88
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 821 aagaagcttccatctcagtcagacgatgatggcacacacctttaaacctagcaattggag 762
Query: 89 gcagaggcaggtggaactctgagtggaggccagtctggtctacagagtgagttccagggc 148
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 761 gcagaggcaggtggaactctgagtggaggtcagcctggtctacagagtgagttccagggc 702
Query: 149 aggcagggctacccagagaaaccttgatt-taaaaaaacaaaataacaataaaaaagagt 207
||||| |||||| |||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct: 701 aggcaaggctacacagagaaaccttaattaaaaaaaaacaaaataacaacaaaaaagagt 642
Query: 208 -taaactgaaaaaaaataaaagaatttgtaagctaactgagtataagatatgtgaaagta 266
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ct-aactg-aaaaaaataaaagaatttgtaagctaactgagtataagatatgtgaaagta 584
Query: 267 ctggtatttcttttctctctttagaaaattatagagggtagatctggtattactttcaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctggtatttcttttctctctttagaaaattatagagggtagatctggtattactttcaaa 524
Query: 327 ccatcattccagaggaaatgttgtttttacaactgtcagagggaattatatgagaaaaac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ccatcattccagaggaaatgttgtttttacaactgtcagagggaattatatgagaaaaac 464
Query: 387 aatggcgatttcctaacccatcttaacacttatagggtgacttaaagtgacaatctgttt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aatggcgatttcctaacccatcttaacacttatagggtgacttaaagtgacaatctgttt 404
Query: 447 gctaacataaaagaataatttaattaatcatatatttatttattcatgaatgtctacaac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gctaacataaaagaataatttaattaatcatatatttatttattcatgaatgtctacaac 344
Query: 507 acaaaagggaaatatattcaggggtgatttttagtaaacagttttgattagaagatcaca 566
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 343 acaaaagggaaatatattcaggggtgaattttagtaaacagttttgattagaagatcaca 284
Query: 567 tttgaaataaaatagatatgcattaataataacatcttctgatatttaacaaatactgaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tttgaaataaaatagatatgcattaataataacatcttctgatatttaacaaatactgaa 224
Query: 627 tattttaagaaggtaactaaacagaactgtagcttttgtttttttatttttgaagaacag 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tattttaagaaggtaactaaacagaactgtagcttttgtttttttatttttgaagaacag 164
Query: 687 tttt 690
||||
Sbjct: 163 tttt 160
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1089
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1079
Effective search space: 733720
Effective search space used: 733720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_h01.g1 MSMg01no546_h01.g1 CHROMAT_FILE:
MSMg01no546_h01.g1 PHD_FILE: MSMg01no546_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:44 2005
(499 letters)
>mm_chr13_8277049_8277946
Length = 898
Score = 919 bits (475), Expect = 0.0
Identities = 490/495 (98%), Gaps = 1/495 (0%)
Strand = Plus / Plus
Query: 1 acttgaacagaaccacagtgtctggttaaaaaaaaaaatctgagtctcagaaggaccttt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 acttgaacagaaccacagtgtctggttaaaaaaaaaa-tctgagtctcagaaggaccttt 259
Query: 61 ctcctcacttggctaacatcacatcctggcgcttttgacagagaagcagaaattctgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctcctcacttggctaacatcacatcctggcgcttttgacagagaagcagaaattctgtga 319
Query: 121 gatctcccaggatgacaacactgacagccagatctgaaacaatagaatcttacacaaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatctcccaggatgacaacactgacagccagatctgaaacaatagaatcttacacaaagg 379
Query: 181 gaatagcacaaaatccataacacgaaagccagccccatccattgcattggagatgcaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaatagcacaaaatccataacacgaaagccagccccatccattgcattggagatgcaaag 439
Query: 241 tcaaagtcctacccacctcaggcaggttagtggctgtactcaggaccaaagattttacga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcaaagtcctacccacctcaggcaggttagtggctgtactcaggaccaaagattttacga 499
Query: 301 taagcaaagatggtccttagacctcatggccaagggctcttccgatttgatctacccaca 360
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 500 taagcaaagatggtccttagacctcatggccaagggctcctccgatttgatccacccacg 559
Query: 361 cattgtgtgacattctgttgagagatgtaaacaaatgtcattttgtccccagatcaggat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tattgtgtgacattctgttgagagatgtaaacaaatgtcattttgtccccagatcaggat 619
Query: 421 ccagtaaaaccaaagtaaaaattctatcaatgtacaacatgaagaaccaatgagcttaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccagtaaaaccaaagtaaaaattctatcaatgtacaacatgaagaaccaatgagcttaca 679
Query: 481 agaggaatttttaca 495
|||||||||||||||
Sbjct: 680 agaggaatttttaca 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 898
Length adjustment: 10
Effective length of query: 489
Effective length of database: 888
Effective search space: 434232
Effective search space used: 434232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
