BAC Information

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BAC

Clone NameMSMg01-546K02
Chromosome13 (Build37)
Map Location 61,654,791 - 61,655,370
singlet/doubletsinglet
Overlap genenone
Upstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm
Downstream geneCts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546K02.T7 (MSMg01no546_k02.b1)MSMg01-546K02.TJ (MSMg01no546_k02.g1)
ACCAG611409AG611410
length731724
length of high quality
(start - end)		584 (42 - 625)609 (74 - 682)
definitionCHROMAT_FILE: MSMg01no546_k02.b1 PHD_FILE: MSMg01no546_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:59 2005CHROMAT_FILE: MSMg01no546_k02.g1 PHD_FILE: MSMg01no546_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTTTTGGTTAAAAAAGAAAGTCAATGGCCTCTGAACAGACCAATGCAT
GTACCAACAGAACAGTGTGGTTCACAGTCAATGATAGTTCCAGCAGAATG
CACTCAGATAGCTCCACCAATGTGCTCTTTCTGGTCTGGGGTTAGTGGTC
TTCATGCTCACCATGGTAGGACTGTGGTCTCCCTCGGAGTTCCTAATGAC
TGTTTCTGATGAGACCTGGAAGAACCCAGCAGACCTGAAGAGCCTTCCGA
GTGTCCCTCATTCACTTGGACCTCCCAACTAGGCCTTAGGACTGTAGCAG
CTCCCCTACTGGAGGATTATTGTCTCAGGATAGGTCTTCCATGATCCACC
ATTTCACCAAGTGTAGCAGATTTATATTCTTTTGTAGAATCCTCCAGTTT
CCTAGAGTACCTGTTCATCTTCTATATAATAGGGTCCTTTGTGTGGACAT
TCCATTACATACTCATTGTTCAGCACAGCCATGTCTACCTAATAGCGGGG
AAGCCCTGCCCCTAAACCTCAGTCAAATGCACTAAAAACAATTTAAGAAA
AAGTTGCTAGGAACTTGAAAGCAAGAAAAAGGGAGGTGAATGAACAAAGG
AATAGACAGACAGAACATGGCATCTCCTAAGTGTGGCAGAGTATGAAGTT
TATTATAGATAAAAAGTAGAGCACAGCCAAN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGAAGATGGACTCCAGAATATCAAAT
AACACTATTAAAAAATGGGGTACAGAGCTAAACAAAGAATTCTCAACTGA
GGAATACCGAATGGCTGAGAAGTACCTGAAAAAATGTTCAACAACCGTAA
CCATCAGGGAAAGGCAAATCAAAACAACCCTGAGATTCTACCTCACACCT
CACAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAACAGATGCTGGC
AAGGATGTGGGGACAGAGGGACACTCCTCCATTGTTGGTGGGATTGCAAA
CTTGTACAACTTGCAATCTGGAAATCAGTCTGGTGGCTCCTCAGAAAACT
GGACATAATACTACCGGAAGATCCAGCAATTCCTCTCCTGGGCATATACC
CAGAAGATGTTCCAACTTGTAATAAGGACACATGCTCCACTATGTTTATA
GCAGCCTTATTTAGAATAACCAGAAGCTGGAAAGAACCCAGATATCCCTC
AACAGAGGAATGGATACAGAAAATTTGGTACATTTACACAATGGAGTACT
ACTCAGCTATTAAAAACAATGATTTCATGACATTCTTAGGTAAATGGATG
GAAGTAGAAAATATCATCCTGAGTGAGGGAACCCAGTCATAAAAGAACAC
ACATGGCAAGTAGTCACTGATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_k02.b1 MSMg01no546_k02.b1 CHROMAT_FILE:
MSMg01no546_k02.b1 PHD_FILE: MSMg01no546_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:59 2005
         (584 letters)



>mm_chr13_61654587_61655570
          Length = 984

 Score = 1067 bits (552), Expect = 0.0
 Identities = 573/580 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttttggttaaaaaagaaagtcaatggcctctgaacagaccaatgcatgtacc 64
           ||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 784 gaattcacttttggggaaaaaagaaagtcaatggcctctgcacagaccaatgcatgtacc 725

                                                                       
Query: 65  aacagaacagtgtggttcacagtcaatgatagttccagcagaatgcactcagatagctcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aacagaacagtgtggttcacagtcaatgatagttccagcagaatgcactcagatagctcc 665

                                                                       
Query: 125 accaatgtgctctttctggtctggggttagtggtcttcatgctcaccatggtaggactgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 accaatgtgctctttctggtctggggttagtggtcttcatgctcaccatggtaggactgt 605

                                                                       
Query: 185 ggtctccctcggagttcctaatgactgtttctgatgagacctggaagaacccagcagacc 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 604 ggtctccctcggagttcctaatgattgtttctgatgagacctggaagaacccagcagacc 545

                                                                       
Query: 245 tgaagagccttccgagtgtccctcattcacttggacctcccaactaggccttaggactgt 304
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgaagagccttctgagtgtccctcattcacttggacctcccaactaggccttaggactgt 485

                                                                       
Query: 305 agcagctcccctactggaggattattgtctcaggataggtcttccatgatccaccatttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agcagctcccctactggaggattattgtctcaggataggtcttccatgatccaccatttc 425

                                                                       
Query: 365 accaagtgtagcagatttatattcttttgtagaatcctccagtttcctagagtacctgtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 accaagtgtagcagatttatattcttttgtagaatcctccagtttcctagagtacctgtt 365

                                                                       
Query: 425 catcttctatataatagggtcctttgtgtggacattccattacatactcattgttcagca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 catcttctatataatagggtcctttgtgtggacattccattacatactcattgttcagca 305

                                                                       
Query: 485 cagccatgtctacctaatagcggggaagccctgcccctaaacctcagtcaaatgcactaa 544
           |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagccatgcctacctaatagctgggaagccctgcccctaaacctcagtcaaatgcactaa 245

                                                   
Query: 545 aaacaatttaagaaaaagttgctaggaacttgaaagcaag 584
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaacaatttaagaaaaagttgctaggaacttgaaagcaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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