Query= MSMg01no546_o02.b1 MSMg01no546_o02.b1 CHROMAT_FILE:
MSMg01no546_o02.b1 PHD_FILE: MSMg01no546_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:19 2005
(521 letters)
>mm_chr13_113949281_113950200
Length = 920
Score = 683 bits (353), Expect = 0.0
Identities = 492/593 (82%), Gaps = 87/593 (14%)
Strand = Plus / Plus
Query: 5 gaattcatgtggatctatcgccatgagacttccagtggccagagcatccctccccatcct 64
|||||||||| || | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gaattcatgtaga-caatagccatgagacttccagtggccagagcatccctccccatcct 181
Query: 65 cttgctttctgcctcctctctccttcagtgtttttctaagtgaagaaaaccaaactttag 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cttgctttctgcctcctctccccttcagtgtttttctaagtgaagaaaaccaaactttag 241
Query: 125 taaaataaacagttacccatggaaagggaagcaacaggactgtggtca------------ 172
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 taaaataaacagttacccatggaaagggaagcaacaggactgtggtcagtcaccttcttt 301
Query: 172 ------------------------------------------------------------ 172
Sbjct: 302 tagatcttccatgaatggtagacttggtataaagcttaagtgaccaagtcacaataattt 361
Query: 173 -----------gttttacctgcatctatgtatgtgcaccacacacatgtatgttactcaa 221
||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct: 362 tacccatgagtgttttacctgcatctatgtatgtgcactatacacatgtatgttgttcaa 421
Query: 222 ggaggccagaagagggcattggatctcctggagctggagctaaccatggttgttacctgt 281
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 422 ggaggccagaagagggcattggatctcctggagctggagctaaccatggatgttacctgt 481
Query: 282 ggattctgtgaactgaacttgggt-cttctgagagatcaacaagcactaacaatctacta 340
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 482 ggattctgtgaactgaacttgggttct-ctgagagagcaacaagcactaacaatctacta 540
Query: 341 acccatctctccaggccctgcctataaattcataatggaatatattttaaagaagaaaaa 400
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acccatctctccaggccctacctataaattcataatggaatatattttaaagaagaaaaa 600
Query: 401 cttcctgcaaaacagaaataaacagacccccccccgacaagaaataaataccctgaagtg 460
||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 601 ctttctgcaaaacagaaataaacagacctcccca-gacaagaaataaataccctgaagtg 659
Query: 461 tttgataaacataattttgagataacattgctgtggtcattaaaagatcattt 513
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tttgataaacataattttgagataacattgctgtggtcattaaaagatcattt 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 920
Length adjustment: 10
Effective length of query: 511
Effective length of database: 910
Effective search space: 465010
Effective search space used: 465010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_o02.g1 MSMg01no546_o02.g1 CHROMAT_FILE:
MSMg01no546_o02.g1 PHD_FILE: MSMg01no546_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:19 2005
(534 letters)
>mm_chr13_114115646_114116578
Length = 933
Score = 961 bits (497), Expect = 0.0
Identities = 524/533 (98%), Gaps = 1/533 (0%)
Strand = Plus / Minus
Query: 1 agaacaagtctctggggctgtgtttgttttgacaaaatttagccaaaactttttagcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 agaacaagtctctggggctgtgtttgttttgacaaaatttagccaaaactttttagcagt 673
Query: 61 tcagctttgcccattcctgtagcgcacttcctttaagcgaagtcttttgatcttacaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tcagctttgcccattcctgtagcgcacttcctttaagcgaagtcttttgatcttacaggg 613
Query: 121 gtatttctgacaagggttgaaaagtttagatagggtctcaagggaaaatcacagccactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gtatttctgacaagggttgaaaagtttagatagggtctcaagggaaaatcacagccactc 553
Query: 181 gtacacaggtgctatgagagtttctttggagttccatgggtagaagattccaaataacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 552 atacacaggtgctatgagagtttctttggagttccatgggtagaagattccagataacag 493
Query: 241 gcctaacctcacattcctgaaatatgctgtgttaagctacttgtaaacacacaaggagag 300
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 492 gcctaacctcacattcctgaaatatgctgtgttaagctacttgtgagcacacaaggagag 433
Query: 301 ggactggccacagatgagagacctcaagagggagagctctgtagggacgtggacagcact 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 432 ggactggccacagatgagagacctcaagagggagagcactgtagggacgtggacagcact 373
Query: 361 cacttctgggacacttttcctggagaaatgcatcccttctgccaaatcatatacccttta 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 372 cacttctgggacacttttcctggagaaatgcatcccttctgccaaatcacatagccttta 313
Query: 421 atgaggagttcgttccaaaactcacataccagttcatgataatgactgaaagctgagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atgaggagttcgttccaaaactcacataccagttcatgataatgactgaaagctgagaaa 253
Query: 481 gggtgtgtgtattcctacctttcaaaagtcagtaagatatcttgcttttctgg 533
||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 252 gggtgtgtgcattcctacctttcaaaagtcagtaagatatc-tgcttttctgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 933
Length adjustment: 10
Effective length of query: 524
Effective length of database: 923
Effective search space: 483652
Effective search space used: 483652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
