BAC Information

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BAC

Clone NameMSMg01-547O16
Chromosome13 (Build37)
Map Location 10,433,929 - 10,434,631
singlet/doubletsinglet
Overlap genenone
Upstream geneDip2c, LOC666986, Zmynd11, Chrm3, LOC100039604
Downstream geneLOC100039648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547O16.T7 (MSMg01no547_o16.b1)MSMg01-547O16.TJ (MSMg01no547_o16.g1)
ACCAG612389AG612390
length742973
length of high quality
(start - end)		705 (38 - 742)---
definitionCHROMAT_FILE: MSMg01no547_o16.b1 PHD_FILE: MSMg01no547_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:40 2005CHROMAT_FILE: MSMg01no547_o16.g1 PHD_FILE: MSMg01no547_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTT
ATTATACTCACACTTTTACGATATGAATGTAGAAAGTATACTAGCAAGGG
AAGAAAGAAAAGAGTGGGCAGGGGTTAAGTGTAAGCAGAATCAAAATACA
TAATATACATGAAGAAGGTTTTGTATATGAATCCCATACTAAGTTCAATG
AATATGTGGCAGTGAAAACTGTCAGGTTGTTACACAACTGAAAGCCTGAA
AGTTCATGAGACTGTTCCATCCTTAGTGCCCTGAACAGCCTCTAACCAGT
AATAGACAAACAATAGCTTATTATTATTATTATCATTATCATTATTATGT
ATTACTAAATATTAGTGAACAGTAGGTAAGTGAACCCGTGTTTTGTTTCT
GAGAGTTGATAATAGTCTCAGAGTTTGCTCAGCACTTAACAGGCAACATA
TCCTACTATTGTGGAGTCTAGTTGGTAGAGTTTATCTTTCATGTCTCTTG
TTGCTAACATGAAAGGGATATTCCTTTGTTTCCCAGCCTGAGTGGTAGCC
TGATGTAGATTTCTACATTTTTTAGATTGGGTGGGTGTGGCTTAGTATGT
GTTTTCTTTTATACCACCATCACAAGATTGCAGTGATTTCTTCTGATTGT
AACATATCTTTCCTATTGGTCAGCACTCTGCTAGTGCCCATTCAAAACTT
TTTCATAACATGTTTGGAAGTGTGGGTACACTTGGTTTTGTG

TGTTTTTGTNTTTTTGTCNNCTTTGGTTTTTTTTTCTTTCTTCGTTTNTT
TCTTATACTTATTTATTTCTTCTTTTTTCTCTATATTTCCTCTTTTTTTT
TTTATGTTTTCATATTTTNNNTTTTCGTTCTTCATGTTATTTTTTTTTNN
NTNNCCCCCTAAAATGTNACATTAAAATTGGGGGGGGNTTTTAAAAGGCC
CCCCTTTGTNGGGACCGGGGGGACCCCCCGACCCACCCTTTGGGGAACCC
CGTTTTTTCTTTTCACACCCAATTNATAATAAAGGGGGTTTGGNNAAACA
ACCCTTAAAANNTTAAAGNAAAAAAGGGGNAAATTTCTTTCTTTTCCCGG
CCGGGAAAAAATTTTTTCCCCAAGGGGGGGGAAAAGGGNAAAACACAAAA
AAGGGGAAAAAAAGGNGNNNNAAAAAAACCCCTTTCCCTTGTGGGATTCC
CCTTTGGGGTTGTGGGAAAATTGGGAAAAAAAAAAATTTTTTTTGGGGCC
CTTTGTGGTTTGGGAAACACCCCAAACCCGCGGGGGTTGGGGGCCCAAGA
GGGGGGGGGGAAATCCAAAGGTTTTTTTTCCCTTTCAAACCCCAAAAACC
TTTTTTTTTTAAGAGGCTCTTTTCCCTTTTTGGGGAAAATTGTGAAAAAA
AAAGAAAAAAATTGGGGGGAAAAAAACCCCTTTAAGAGAAAAAAATCCAA
ATGTGTGTTTTTTTAAAAAAAAAAAAAAAAGGNGCGCCAAATATTTTTTT
TCCCCACCACCCCCTTCTTTTTTGTGTAGAAGAGAAAAAAAAATGTGGTT
TGTTGGGGAAACAAACAAAAAATATGTGTTTGTGGGGGGGGGGGGGGGGG
GGTTTTTTTTTTTTTCTTCCCTCTTCTAAAGAGAGGGNAAGAAAAAAATA
TGTGTGGTGGGAGAGAATATTTCTTTCCCCCGCACCNTATTATAAAAAAA
ATATTTTTGTTTGTGAGAAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_o16.b1 MSMg01no547_o16.b1 CHROMAT_FILE:
MSMg01no547_o16.b1 PHD_FILE: MSMg01no547_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:40 2005
         (705 letters)



>mm_chr13_10433727_10434831
          Length = 1105

 Score = 1274 bits (659), Expect = 0.0
 Identities = 692/703 (98%), Gaps = 1/703 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttattatactcacacttttacgatatgaatgtagaaagtatactagcaaggg 63
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 203 ggaattccttattatactcacacttttatgatatgaatgtagaaagtatactagcaaggg 262

                                                                       
Query: 64  aagaaagaaaagagtgggcaggggttaagtgtaagcagaatcaaaatacataatatacat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagaaagaaaagagtgggcaggggttaagtgtaagcagaatcaaaatacataatatacat 322

                                                                       
Query: 124 gaagaaggttttgtatatgaatccca-tactaagttcaatgaatatgtggcagtgaaaac 182
           ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 323 gaagaagattttgtatatgaatcccaatactaagttcaatgaatatgtggcagtgaaaac 382

                                                                       
Query: 183 tgtcaggttgttacacaactgaaagcctgaaagttcatgagactgttccatccttagtgc 242
            | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aggcaagttgttacacaactgaaagcctgaaagttcatgagactgttccatccttagtgc 442

                                                                       
Query: 243 cctgaacagcctctaaccagtaatagacaaacaatagcttattattattattatcattat 302
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cctgaacagcatctaaccagtaatagacaaacaatagcttattattattattatcattat 502

                                                                       
Query: 303 cattattatgtattactaaatattagtgaacagtaggtaagtgaacccgtgttttgtttc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cattattatgtattactaaatattagtgaacagtaggtaagtgaacccgtgttttgtttc 562

                                                                       
Query: 363 tgagagttgataatagtctcagagtttgctcagcacttaacaggcaacatatcctactat 422
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 563 tgagagttgataatattctcagagtttgctcagcacttaacaggcaacataccctactat 622

                                                                       
Query: 423 tgtggagtctagttggtagagtttatctttcatgtctcttgttgctaacatgaaagggat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgtggagtctagttggtagagtttatctttcatgtctcttgttgctaacatgaaagggat 682

                                                                       
Query: 483 attcctttgtttcccagcctgagtggtagcctgatgtagatttctacattttttagattg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 attcctttgtttcccagcctgagtggtagcctgatgtagatttctacattttttagattg 742

                                                                       
Query: 543 ggtgggtgtggcttagtatgtgttttcttttataccaccatcacaagattgcagtgattt 602
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggtgggagtggcttagtatgtgttttcttttataccaccatcacaagattgcagtgattt 802

                                                                       
Query: 603 cttctgattgtaacatatctttcctattggtcagcactctgctagtgcccattcaaaact 662
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 cttctgattgtaacatatatttcctattggtcagcactctgctagtgcccattcaaaact 862

                                                      
Query: 663 ttttcataacatgtttggaagtgtgggtacacttggttttgtg 705
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ttttcataacatgtttggaagtgtgggtacacttggttttgtg 905


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space:   761025
Effective search space used:   761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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