BAC Information

Click to search

BAC

Clone NameMSMg01-548F15
Chromosome13 (Build37)
Map Location 85,617,961 - 85,618,276
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1
Downstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548F15.T7 (MSMg01no548_f15.b1)MSMg01-548F15.TJ (MSMg01no548_f15.g1)
ACCAG612718AG612719
length725745
length of high quality
(start - end)
461 (48 - 508)315 (79 - 393)
definitionCHROMAT_FILE: MSMg01no548_f15.b1 PHD_FILE: MSMg01no548_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:15 2005CHROMAT_FILE: MSMg01no548_f15.g1 PHD_FILE: MSMg01no548_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTGTGGAATACCGAATGGCTGAGAAGCACCTGAAAAAAT
GTTAAACATCCTTAATCATCAGGGAAATGCAATTCAAAGCAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTTCATTGTTGGT
GGGATTTCAAGCTTGTTCAACCACTCTGGAAGTCAGTCTGGCGGTTCCTC
AGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATATCTCTCCTGGG
CATATATCCAGAAGATGTTCCAACCAGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTATACAATG
GAGTATTACTCAGCTATTAAAAAGAATGAATTTATGACATTCCTAGGCAA
ATGGATGGACCTTGAGGGCATCATCCTGAGTGAGGTAACCCAATCTCAAA
GGAACTCACACAATATGTACTCACTGATAAGTGGAAATTAGCTCAAAAAC
TTAAGATACCCAAGATATAAGAATACAATTTGGTTAAACGCTTGAAACTC
AAGAAGAAATAAAAACCAAATGTTG
TTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTCTGAAGGGGTAACTAAG
TGTGCAGCGCGTATTCTTATTGCAGCTGTTTGCCTACTGAAATTCTCCCC
TGCTAAAACTCTTTTCTGTTTTTTGGGTTTTTGATTTTCAACTCCATAGT
ATCTGTTGTAGATCTTGCCTTCAGGCACTGTTCTAGGAATGTTGTAAGCA
CTGAAAGGGATTTTCTCAGTTAGCAAAGCCCTAAATTGATATATTCAGTT
TGGTTTTGAATAAATGTTCTGAGTTCTCTTTTGTCTTAAACTAGATATTG
TGGTCTGAGACCTTGAATTTCAGGGAGCATTGAAACTGGAGTGGAAGGAC
AAACAGTGTCCTTCCATGTGTGATAAAGCTCANGAGATATCAACTCCATC
TTTCTCTCATTTTTGTTTTCCATGTGCTTTGGGAAGCACTTGGCAATAAC
TCCACTGGCAAATCACCTTTCTGGGAAGAAAAAATGGAGCTACTAATTAC
ATCATGGGTGGAAAAAAAAATCCCCCCGAAAACTGGGTGTCCCTGGGAAC
CCCTATTTTTATTTTTTCAATGGTCCTTAATAAAAAAAAAGGGGGGGGGA
AATTTTTTAAAAAAAAATTTCCCCCACGTGGTTTACCCCCCCCCAACCCC
TTTGTGTTTTTTTTTTCCCACTTCCCACCCAAAAATATTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_f15.g1 MSMg01no548_f15.g1 CHROMAT_FILE:
MSMg01no548_f15.g1 PHD_FILE: MSMg01no548_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:15 2005
         (315 letters)



>mm_chr13_85617761_85618476
          Length = 716

 Score =  580 bits (300), Expect = e-170
 Identities = 312/316 (98%), Gaps = 1/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttctgaaggggtaactaagtgtgcagcgcgtattcttattgcagctgtttgcctact 60
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 516 cagttctgaaggggtaactaagtgtgcagcgcttattcttattgaagctgtttgcctact 457

                                                                       
Query: 61  gaaattctcccctgctaaaactcttttctg-ttttttgggtttttgattttcaactccat 119
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 456 gaaattctcccctgctaaaactcttttctgtttttttgggtttttgattttcaactccat 397

                                                                       
Query: 120 agtatctgttgtagatcttgccttcaggcactgttctaggaatgttgtaagcactgaaag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agtatctgttgtagatcttgccttcaggcactgttctaggaatgttgtaagcactgaaag 337

                                                                       
Query: 180 ggattttctcagttagcaaagccctaaattgatatattcagtttggttttgaataaatgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ggattttctcagttagcaaagccctaaattgatatattcagtttggttttgaataaatgt 277

                                                                       
Query: 240 tctgagttctcttttgtcttaaactagatattgtggtctgagaccttgaatttcagggag 299
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 276 tctgagttctcttttgtcttaaacaagatattgtggtctgagaccttgaatttcagggag 217

                           
Query: 300 cattgaaactggagtg 315
           ||||||||||||||||
Sbjct: 216 cattgaaactggagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 716
Length adjustment: 9
Effective length of query: 306
Effective length of database: 707
Effective search space:   216342
Effective search space used:   216342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)