BAC Information

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BAC

Clone NameMSMg01-548O05
Chromosome13 (Build37)
Map Location 49,705,071 - 49,705,400
singlet/doubletsinglet
Overlap geneCenpp, Ogn
Upstream geneAW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Tes3-ps, Ecm2, Aspn, Omd
Downstream geneNol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548O05.T7 (MSMg01no548_o05.b1)MSMg01-548O05.TJ (MSMg01no548_o05.g1)
ACCAG613127AG613128
length793774
length of high quality
(start - end)
365 (44 - 408)328 (73 - 400)
definitionCHROMAT_FILE: MSMg01no548_o05.b1 PHD_FILE: MSMg01no548_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:56 2005CHROMAT_FILE: MSMg01no548_o05.g1 PHD_FILE: MSMg01no548_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGCTACACACTAGCTAAACAAGGCATCTACAAGAAGCATTTAGACAG
TTCTGTCTTTCTCACCCTGTGAAATGTCAGTTCACAGTAGATAACACACC
TGAACTTAAGCCCTGTATGCAGAGGCTGCTGGAAGGGGAAGAAGGAAAAT
CCTTCATACACAGGCATAGGCAGAACTGTCTGACTGGAGCACCAAGAGCA
CAGGGAAGGGCCCCACGCATTGACAAAATGGGAGTGCATGAAATTTAAAA
GCTCTACATAGCCAAAGATGCTATCATTTAAGGGAACAGCCAACCTAGAG
CATGGGATAAGATCATTAATGGTCACATTCCTGTGGGGTGTTAACATCTA
GAATGTACAAAGAATTGTGACTACTAAAAACAAAACAAACAACTAATAAG
GTGCTAATGAACCAAATAGTTTTCAAAAGGAAACTCGTATAGGGCTATAG
ATAATTTTACAAAAGTCTTTCATCTTGCTATAGCTTTGGGGAATATCCAA
CTAATGGGCACTTTTGAAGTTCCCTCCTCTCCTATACTTCATTGGGCTAA
GATCAGACACATCTATGAAACACTTCTGGCCATGGGGTGGTTTGGGAAAA
AAACTGGTTCAGCTATCCTGCTTACTGGAGTGGGGTAAAACCGGTAATCT
GGATGGTTGTGTAAATTCAGCGAATATAAGGGTTCCCTAAAAATTCATAA
GAATCTCCAAATACGCCCCTAAATTTTATTTATATATTAATTA
ATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAAAAATCCAGTCTTAGGAAATGAATG
TAAGAATACTTACTGGCTATGCATGCCAATCACATAGAGTACCAACAAAT
AAAAAACTCCTTACTATAGGGATTTACTTTTAATCACATTTCACTCTACC
AATTTGTACCAAGGACCTGTAATGACATGTCACTGAGTTATGACTTTTAT
CATCACTCACATCCAACCTTCAGCGCAAAGCAATTAGTTGGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTTAACAGCATAAAACT
ATGTGCTGCCCACTGCGTATCATGCCCCCACACACTGGAAAAAAATCAGT
CAGATACATAATAATATTCACTACTTTATAAGTTCTTTTTTACTACAAAT
CAGACTGTGAAGATTTTCAGATTTTCAGATAAACCATTCCTAAAATTTTC
CTTTCTTAACTCACAATGAGCCAATTTTAATGCCACAGCTTCCTTTTCCA
AGGGAATGATTCAATATTCTGGTATTAATTCCCGCCCCCCCTGCTTAGAT
TAAACAGAACAGTGTATCTTCTGTAAACATGTTTCAAAGTTAAAAAGCTC
ATTTGCCTTATTATCCCAATGTGTAATTGGATCTGGAGTTGCTTTTCTAA
CCATATTTGTCAGGAATACTTATTCAAAAAAACTCTATATATTCCTTAAA
AAGCTGTTTATTGGGTATAAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_o05.g1 MSMg01no548_o05.g1 CHROMAT_FILE:
MSMg01no548_o05.g1 PHD_FILE: MSMg01no548_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:56 2005
         (328 letters)



>mm_chr13_49704871_49705598
          Length = 728

 Score =  627 bits (324), Expect = 0.0
 Identities = 328/330 (99%), Gaps = 2/330 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaaatccagtcttaggaaatgaatgtaagaatacttactggctatgcatgccaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaaatccagtcttaggaaatgaatgtaagaatacttactggctatgcatgccaatca 260

                                                                       
Query: 61  catagagtaccaacaaataaaaaactccttactatagggatttacttttaatcacatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catagagtaccaacaaataaaaaactccttactatagggatttacttttaatcacatttc 320

                                                                       
Query: 121 actctaccaatttgtaccaaggacctgtaatgacatgtcactgagttatgacttttatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actctaccaatttgtaccaaggacctgtaatgacatgtcactgagttatgacttttatca 380

                                                                       
Query: 181 tcactcacatccaaccttcagcgcaaagcaattagttggtgtgtgtgtgtgtgtgtgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcactcacatccaaccttcagcgcaaagcaattagttggtgtgtgtgtgtgtgtgtgtgt 440

                                                                       
Query: 241 gtgtgtgtgtgtgtgtgtg--atgttaacagcataaaactatgtgctgcccactgcgtat 298
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtgtgtgtgtgtgtgtgatgttaacagcataaaactatgtgctgcccactgcgtat 500

                                         
Query: 299 catgcccccacacactggaaaaaaatcagt 328
           ||||||||||||||||||||||||||||||
Sbjct: 501 catgcccccacacactggaaaaaaatcagt 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)