BAC Information

Click to search

BAC

Clone NameB6Ng01-001J03
Chromosome14 (Build37)
Map Location 7,253,923 - 7,423,396
singlet/doubletdoublet
Overlap geneLOC100041958, LOC100041964, LOC546590, LOC666906, LOC100042024
Upstream geneLOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421, LOC100041817, LOC100041431, LOC100041438, LOC100041442, LOC100041848, LOC100041456, LOC100041758, LOC100041470, LOC100041804, LOC100041487, LOC100041747, LOC100041507, LOC100041836, LOC100041728, LOC100041774, LOC100041530, LOC100041540, LOC100041840, EG666844, LOC666851, LOC100041569, LOC100041970, LOC100042000, EG666874, B930046C15Rik, LOC100041600
Downstream geneLOC100041664, LOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043, EG666918, LOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001J03.bB6Ng01-001J03.g
ACCDH839853DH839854
length1,1181,073
definitionDH839853|Mus musculus domesticus DNA, BAC clone: B6Ng01-001J03, 5' end.DH839854|Mus musculus domesticus DNA, BAC clone: B6Ng01-001J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,422,271 - 7,423,396)(7,253,923 - 7,255,006)
sequence
gaattctccagctttggaaggagaggttgccaaaggggatcccacgggtc
catgagaggctccaggagaggcaccccagaaaaggaccaagctgggcaga
actagttaacaggtaggtcatggcagttgctagtgacatcatcagtaatg
ccttccttggagaatctcttgtatctaggatagaactagaatcttctgtg
ttgtcacctgtgttgtggtgacagcaactgcctgtggttcatcacttctg
tttgctctgagatcaccagcaggaatgttttcctggctgctcaggctatt
tcagaaagagaatggcgatgaaggagagaccagaccaacagagaaggaag
agggaatcctttctcatgaaaaaggaagaaggaaatcattctggagaagg
cacagtgagtcctgggcagagttggggaacttcctggtataggtaggctt
gagctgggccttccaggagtaggtcttacaagctgaagccttggactttg
tcaacatcagaaaaagagtcaagaatttctgatgattagtttgacagagc
caggaattgacaaacctgcatctacttttctgggagctatttaatttcat
tttgagtggcaaaaaatgtcaggagtgggcactatgagaataacagtgtg
tcctttcatggaagggagttgaagcacttcatcttccagattactgtagg
taacttgagtctctgatgaaaagaacagacaaggatgctcccctggtcat
gtcatgtggtgaggactcagacactttggatttgaagacacacgattaat
tagtgcttgatagtgctaagcactatgaacttcaggattccctgcgtccc
atctgatatgacctgacatgttccccatatctttatgtctgaggcagtta
tacattcaaggcaaccgggcctgtaacagggtatgtggcttatgtctgac
attggtggttaggaagaggaacttactttagcgaaccagcttgcaagata
gctttctgctcttttaggcattcactggacttagcttttcttctcctcat
cttcttcttgggactcaaatgggctccctgcccatgggcagcaaggatgc
aaatttcttgctgtttac
gaattcaccacagaactcaaatatttcatcaagttgaacacataatgcaa
gtgcattgttgcttgaagtatggtttccagtcctaagcattggcattgtc
agcagactgtaaggcaggcaattcctcaggtcctaccacatacccttatg
accagaatatagagagagtcacacacacacacacacatgcatgcacacag
aatcagggtgtatttgcagggagaatgagaaagtacaatttaaatagaat
ccagaggaaatgcagaggacattctgtttataaggctcaaaatctgagaa
gagtattaatgagcccaagaccttccatcatgtatcaggatggaccaaat
gggaccaagctttcctggtgatatagcaagcttcagcaagcaacacctgc
cagacaattacaaagctttgcaaacaaacaaacaacgaactcaagcaagc
aaacaatcaatcaaaacctcacagcaactaatatctcactcaaacggtca
cgtcagtgcctctatcaatacatgctgagacatcacatcctcttcaatcc
ctcagttgtaggctttcattttcatataaaaaaatagaataccctatgtc
cgcagctcactcctgctctgacttcaagttcagcctgtgagaatgtttag
ggagaaaaggttgggcacagtgacaccctggagttacagtctcccagtac
cataaaatttaataagaataaattgtaggccataccatagacccaagaaa
ttgaccatgatgtttgacagaatgaaaaatacctcttgtgcaaagctttc
tcactgatgaagatcaggtgatcttgtagctcatttttcccactggtcat
cggctgactggtagacttttccacttttctcacccatcttctgaacagag
tgttggggatgatggtggtacaccagcagcccctatgggtagatgaacaa
agtgaatatgcatactgtcaggacagagcatggacagaacactgagttct
atacgacatctgacaaaacagatgcatgtgaccagtcgacctctttcttt
ccttagcacatgcatcatgtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_7422271_7423396
seq2: B6Ng01-001J03.b_47_1164 (reverse)

seq1  GTAAACACAAAAGAATTTGCATACTTGATGGCCCAGGGGCAGGGGAGACC  50
      |||||||  ||  ||||||||| |||| | ||||| ||||| ||||| ||
seq2  GTAAACAGCAAGAAATTTGCATCCTTGCT-GCCCATGGGCA-GGGAGCCC  48

seq1  ATTCTGAGTCCCAAGAAGAAGATGGAGGGAGAGAAAAGATAAAGACAGTG  100
      ||| ||||||||||||||||||| ||||   ||||||| |||   |||||
seq2  ATT-TGAGTCCCAAGAAGAAGAT-GAGGAGAAGAAAAGCTAAGTCCAGTG  96

seq1  AATTCCTAAAAGAGCAGAAAAGCTATCTT-CCAGCTGGTTTGCTAAGCTA  149
      ||| ||||||||||||| ||||||||||| | |||||||| |||||  ||
seq2  AATGCCTAAAAGAGCAG-AAAGCTATCTTGCAAGCTGGTTCGCTAAAGTA  145

seq1  TGTTCCTCTTCCTAACCACCATTGTCAGACATATGCCACACTCCCTGTTA  199
       |||||||||||||||||||| ||||||||||| ||||||  ||||||||
seq2  AGTTCCTCTTCCTAACCACCAATGTCAGACATAAGCCACATACCCTGTTA  195

seq1  CAGGCCCGGTTGCCTTGAAATGTATAAGCTGCCTCAGACATAAAGATATG  249
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  CAGGCCCGGTTGCCTTG-AATGTATAA-CTGCCTCAGACATAAAGATATG  243

seq1  GGGAACATTGTCAGGTCATATCAGATGGGACGCAGGGAAATCCTGAAGTT  299
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGAACA-TGTCAGGTCATATCAGATGGGACGCAGGG-AATCCTGAAGTT  291

seq1  CATAGTGCTTAGCACTATCAAGCACTAATTAATCGTGTGTCTTCAAATCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGCTTAGCACTATCAAGCACTAATTAATCGTGTGTCTTCAAATCC  341

seq1  AAAGTGTCTGAGTCCTCACCACATGACATGACCAGGGGAGCATCCTTCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGTGTCTGAGTCCTCACCACATGACATGACCAGGGGAGCATCCTTGTC  391

seq1  TGTTCTTTTCATCAGAGACTCAAGTTACCTACAGTAATCTGGAAGATGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTTCATCAGAGACTCAAGTTACCTACAGTAATCTGGAAGATGAA  441

seq1  GTGCTTCAACTCCCTTCCATGAAAGGACACACTGTTATTCTCATAGTGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCAACTCCCTTCCATGAAAGGACACACTGTTATTCTCATAGTGCC  491

seq1  CACTCCTGACATTTTTTGCCACTCAAAATGAAATTAAATAGCTCCCAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGACATTTTTTGCCACTCAAAATGAAATTAAATAGCTCCCAGAA  541

seq1  AAGTAGCTGCAGGTTTGTCAATTCCTGGCTCTGTCAAACTAATCATCAGA  599
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATGCAGGTTTGTCAATTCCTGGCTCTGTCAAACTAATCATCAGA  591

seq1  AATTCTTGACTCTTTTTCTGATGTTGACAAAGTCCAAGGCTTCAGCTTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGACTCTTTTTCTGATGTTGACAAAGTCCAAGGCTTCAGCTTGT  641

seq1  AAGACCTACTCCTGGAAGGCCCAGCTCAAGCCTACCTCTACCAGGAAGTT  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGACCTACTCCTGGAAGGCCCAGCTCAAGCCTACCTATACCAGGAAGTT  691

seq1  CCCCAACTCTGCCCAGGACTCACTGTGCCTTCTCCAGAATGATTTCCTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTCTGCCCAGGACTCACTGTGCCTTCTCCAGAATGATTTCCTTC  741

seq1  TTCCTTTTTCATGAGAAAGGATTCCCTCTTCCTTCTCTGTTGGTCTGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTCATGAGAAAGGATTCCCTCTTCCTTCTCTGTTGGTCTGGTC  791

seq1  TCTCCTTCATCGCCATTCTCTTTCTGAAATAGCCTGAGCAGCCAGGAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCATCGCCATTCTCTTTCTGAAATAGCCTGAGCAGCCAGGAAAA  841

seq1  CATTCCTGCTGGTGATCTCAGAGCAAACAGAAGTGATGAACCACAGGCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGCTGGTGATCTCAGAGCAAACAGAAGTGATGAACCACAGGCAG  891

seq1  TTGCTGTCACCACAACACAGGTGACAACACAGAAGATTCTAGTTCTATCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTCACCACAACACAGGTGACAACACAGAAGATTCTAGTTCTATCC  941

seq1  TAGATACAAGAGATTCTCCAAGGAAGGCATTACTGATGATGTCACTAGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACAAGAGATTCTCCAAGGAAGGCATTACTGATGATGTCACTAGCA  991

seq1  ACTGCCATGACCTACCTGTTAACTAGTTCTGCCCAGCTTGGTCCTTTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCATGACCTACCTGTTAACTAGTTCTGCCCAGCTTGGTCCTTTTCT  1041

seq1  GGGGTGCCTCTCCTGGAGCCTCTCATGGACCCGTGGGATCCCCTTTGGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCCTCTCCTGGAGCCTCTCATGGACCCGTGGGATCCCCTTTGGCA  1091

seq1  ACCTCTCCTTCCAAAGCTGGAGAATTC  1126
      |||||||||||||||||||||||||||
seq2  ACCTCTCCTTCCAAAGCTGGAGAATTC  1118

seq1: chr14_7253923_7255006
seq2: B6Ng01-001J03.g_69_1141

seq1  GAATTCACCACAGAACTCAAATATTTCATCAAGTTGAACACATAATGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACAGAACTCAAATATTTCATCAAGTTGAACACATAATGCAA  50

seq1  GTGCATTGTTGCTTGAAGTATGGTTTCCAGTCCTAAGCATTGGCATTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTGTTGCTTGAAGTATGGTTTCCAGTCCTAAGCATTGGCATTGTC  100

seq1  AGCAGACTGTAAGGCAGGCAATTCCTCAGGTCCTACCACATACCCTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTGTAAGGCAGGCAATTCCTCAGGTCCTACCACATACCCTTATG  150

seq1  ACCAGAATATAGAGAGAGTCACACACACACACACACATGCATGCACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAATATAGAGAGAGTCACACACACACACACACATGCATGCACACAG  200

seq1  AATCAGGGTGTATTTGCAGGGAGAATGAGAAAGTACAATTTAAATAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGGTGTATTTGCAGGGAGAATGAGAAAGTACAATTTAAATAGAAT  250

seq1  CCAGAGGAAATGCAGAGGACATTCTGTTTATAAGGCTCAAAATCTGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAAATGCAGAGGACATTCTGTTTATAAGGCTCAAAATCTGAGAA  300

seq1  GAGTATTAATGAGCCCAAGACCTTCCATCATGTATCAGGATGGACCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTAATGAGCCCAAGACCTTCCATCATGTATCAGGATGGACCAAAT  350

seq1  GGGACCAAGCTTTCCTGGTGATATAGCAAGCTTCAGCAAGCAACACCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCAAGCTTTCCTGGTGATATAGCAAGCTTCAGCAAGCAACACCTGC  400

seq1  CAGACAATTACAAAGCTTTGCAAACAAACAAACAACGAACTCAAGCAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAATTACAAAGCTTTGCAAACAAACAAACAACGAACTCAAGCAAGC  450

seq1  AAACAATCAATCAAAACCTCACAGCAACTAATATCTCACTCAAACGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATCAATCAAAACCTCACAGCAACTAATATCTCACTCAAACGGTCA  500

seq1  CGTCAGTGCCTCTATCAATACATGCTGAGACATCACATCCTCTTCAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGTGCCTCTATCAATACATGCTGAGACATCACATCCTCTTCAATCC  550

seq1  CTCAGTTGTAGGCTTTCATTTTCATATAAAAAAATAGAATACCCTATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTGTAGGCTTTCATTTTCATATAAAAAAATAGAATACCCTATGTC  600

seq1  CGCAGCTCACTCCTGCTCTGACTTCAAGTTCAGCCTGTGAGAATGTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTCACTCCTGCTCTGACTTCAAGTTCAGCCTGTGAGAATGTTTAG  650

seq1  GGAGAAAAGGTTGGGCACAGTGACACCCTGGAGTTACAGTCTCCCAGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAGGTTGGGCACAGTGACACCCTGGAGTTACAGTCTCCCAGTAC  700

seq1  CATAAAATTTAATAAGAATAAATTGTAGGCCATACCATAGACCCAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTTAATAAGAATAAATTGTAGGCCATACCATAGACCCAAGAAA  750

seq1  TTGACCATGATGTTTGACAGAATGAAAAATACCTCTTGTGCAAAGCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCATGATGTTTGACAGAATGAAAAATACCTCTTGTGCAAAGCTTTC  800

seq1  TCACTGATGAAGATCAGGTGATCTTGTAGCTCATTTTTCCCACTGGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATGAAGATCAGGTGATCTTGTAGCTCATTTTTCCCACTGGTCAT  850

seq1  CGGCTGACTGGGTAGAC-TTTCCACTTTCCTCACCCATCTTCTGAACAGG  899
      ||||||||| ||||||| |||||||||| ||||||||||||||||||| |
seq2  CGGCTGACT-GGTAGACTTTTCCACTTTTCTCACCCATCTTCTGAACA-G  898

seq1  AGTGTTGGGGATGATGGTGGTACACCAGCAGCCCCTATGGGTAGATGAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGGGGATGATGGTGGTACACCAGCAGCCCCTATGGGTAGATGAAC  948

seq1  ACAAGTGAATATGCATACTGTCAAGGAACAGAGCATTGACAGAACACTGA  999
      | |||||||||||||||||||||  | ||||||||| |||||||||||||
seq2  A-AAGTGAATATGCATACTGTCA--GGACAGAGCATGGACAGAACACTGA  995

seq1  GTCCTATACAGACATCTGACAAAACAGGAATGCATGTGACCCAGTCAGAC  1049
      || |||||| |||||||||||||||||  |||||||||| |||||| |||
seq2  GTTCTATAC-GACATCTGACAAAACAG--ATGCATGTGA-CCAGTC-GAC  1040

seq1  CTCTTTCTCTTCACTTAGCACATGCATCATGTGAC  1084
      |||||||| ||| ||||||||||||||||||||||
seq2  CTCTTTCT-TTC-CTTAGCACATGCATCATGTGAC  1073