BAC Information

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BAC

Clone NameB6Ng01-001M10
Chromosome14 (Build37)9 (Build37)
Map Location 123,907,158 - 123,908,07696,718,221 - 96,718,643
singlet/doubletsingletsinglet
Overlap geneVgcnl1
Upstream genePcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneItgbl1, LOC668700, Fgf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001M10.bB6Ng01-001M10.g
ACCDH840002DH840003
length9571,061
definitionDH840002|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M10, 5' end.DH840003|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,907,158 - 123,908,076)(96,718,221 - 96,718,643)
sequence
gaattcttaagcattatgtctctctgttgaatatatttaagaagatcttt
cagtgtgtgaaatagaaaacattctcacgtcaaataatatcagggattca
ccttcaacatgggggatgagactggtgctatttcaatggtataaaactaa
gagagggtatttaactgactttctgcaattattttaactaggtcacatta
caaagggaacatctcatttatattgccttagagggcttaaatgagataaa
attaaagatgttattggcctaactgaaatgtgtgcctgtgtgtttgtgtg
tgtgtattggttttaatgagataaagtagaattaaaagtttttaaaaata
aagacagtaaccataataatttactgttttgttacagcccaaactttctt
ttttgtatacataagaatttgcattgcaattttatgaggtcccatttgtc
aattcttgatcttacagtataagccattggtgttctgttcaagaatgttt
cgcctgtgcccatgtgttcaaggctcttctccactttctcctctataagt
ttcagtgtatctggttttatgtggaggtccttgatccacttgaacttgat
ctttttacaaggagataagaatgggtcgatttaatgccaggtgtggtggt
gcacgcttttaatcccagcacttgggaggcagaggcaggtggatttctga
gttcgaagccagcctgctctacaaagtgagttccaggacagccagggcta
tacagaaaaaccctgtcaataaaaaaaaaaaataaaaaaaaaaggaagaa
aaagaaaagaaagaatgggtcgatttgcattttttctacatgctaacctc
cagttgaaccagcaccatttgttaaaacgctgtctttttttcccactgga
tggtttagcttctttgtcaaagatcaagtgacatatatatgtgggttcat
ttctggg
gaattctgaacaaaggatctccagaggcctgaaggaagctttcagataga
cccgaagaacctgccatttcaggcctacaggcaggcattcccttactcaa
tttcttttcttaaatctgggaagggcaggactcagagagacttagcttgt
tctctcagaaagacagaaaattattgtattcataaagcctccaaaagttc
taataaaagcaaagtataaggggcagactcacaagacctgggtctctgcc
agcttagaacacactaactctattggtgtgccctctctaagccctatttt
tatggtaggaactagacatacccggttcattcagacatgatttcattcag
acatgattaggagctgaaatgatctatgcaaagacctgcacccaattcat
ggggaaaaaaaatcttaccaaatgaaatggtctaaagatgtatttatttt
ctgtgtgtatgagtgtgttagacacttggaactagagttacaggtggttg
caagttaccatgtggatgctaagaattgaaaccagatcctctggaagagc
agccgatgttcttaactgctgagccatctctccagacctcagtttaaaat
tttaaaaagcacagatttaacagtaggtgagcataaatttaaacagcacc
attctttttttttttttttccattttttattaggtatttagctcatttac
atttccaatgctataccaaaagtcccccttacccacccacccccactccc
ctacccacccactccccccctttggccctggtgttcccctgtaccggggc
acacaaagtctgcgtgtccaatggcctctctttcagtgatggccgactag
gccatctttgatacatatgcagctagagtcaagagctcagggtactgtgt
agttcatactgttgttccacctatagggttgagatcccgttagctccttg
ggtactttctctagctcctcattgggagccctgtgatcatcatagctgac
tgggagcatcactctgtactgctagccccgcttgtctcccagagacagct
acatctgggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_123907158_123908076
seq2: B6Ng01-001M10.b_41_953

seq1  GAATTCTTAAGCATTATGTCTCTCTGTTGAATATATTTAAGAAGATCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGCATTATGTCTCTCTGTTGAATATATTTAAGAAGATCTTT  50

seq1  CAGTGTGTGAAATAGAAAACATTCTCACGTCAAATAATATCAGGGATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTGAAATAGAAAACATTCTCACGTCAAATAATATCAGGGATTCA  100

seq1  CCTTCAACATGGGGGATGAGACTGGTGCTATTTCAATGGTATAAAACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAACATGGGGGATGAGACTGGTGCTATTTCAATGGTATAAAACTAA  150

seq1  GAGAGGGTATTTAACTGACTTTCTGCAATTATTTTAACTAGGTCACATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGTATTTAACTGACTTTCTGCAATTATTTTAACTAGGTCACATTA  200

seq1  CAAAGGGAACATCTCATTTATATTGCCTTAGAGGGCTTAAATGAGATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGAACATCTCATTTATATTGCCTTAGAGGGCTTAAATGAGATAAA  250

seq1  ATTAAAGATGTTATTGGCCTAACTGAAATGTGTGCCTGTGTGTTTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGATGTTATTGGCCTAACTGAAATGTGTGCCTGTGTGTTTGTGTG  300

seq1  TGTGTATTGGTTTTAATGAGATAAAGTAGAATTAAAAGTTTTTAAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTGGTTTTAATGAGATAAAGTAGAATTAAAAGTTTTTAAAAATA  350

seq1  AAGACAGTAACCATAATAATTTACTGTTTTGTTACAGCCCAAACTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTAACCATAATAATTTACTGTTTTGTTACAGCCCAAACTTTCTT  400

seq1  TTTTGTATACATAAGAATTTGCATTGCAATTTTATGAGGTCCCATTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATACATAAGAATTTGCATTGCAATTTTATGAGGTCCCATTTGTC  450

seq1  AATTCTTGATCTTACAGTATAAGCCATTGGTGTTCTGTTCAAGAATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGATCTTACAGTATAAGCCATTGGTGTTCTGTTCAAGAATGTTT  500

seq1  CGCCTGTGCCCATGTGTTCAAGGCTCTTCTCCACTTTCTCCTCTATAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGTGCCCATGTGTTCAAGGCTCTTCTCCACTTTCTCCTCTATAAGT  550

seq1  TTCAGTGTATCTGGTTTTATGTGGAGGTCCTTGATCCACTTGAACTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTATCTGGTTTTATGTGGAGGTCCTTGATCCACTTGAACTTGAT  600

seq1  CTTTTTACAAGGAGATAAGAATGGGTCGATTTAATGCCAGGTGTGGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTACAAGGAGATAAGAATGGGTCGATTTAATGCCAGGTGTGGTGGT  650

seq1  GCACGCTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGA  700

seq1  GTTCGAAGCCAGCCTGCTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGAAGCCAGCCTGCTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTA  750

seq1  TACAGAAAAACCCTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGA  800
      |||||||||||||||||    || |||||||||||| |||||||||||||
seq2  TACAGAAAAACCCTGTC----AATAAAAAAAAAAAATAAAAAAAAAAGGA  796

seq1  AGAAAAAGAAAAAGAAAGAATGGGTCGATTTGCA-TTTTTCTACATGCTA  849
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  AGAAAAAG-AAAAGAAAGAATGGGTCGATTTGCATTTTTTCTACATGCTA  845

seq1  ACCTCCAGTTGAACCAGCACCATTTGTTAAAAACGCTGTCTTTTTTTCCC  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCTCCAGTTGAACCAGCACCATTTGTT-AAAACGCTGTCTTTTTTTCCC  894

seq1  ACTGGATGGTTTTAGCTTCT  919
      ||||||||| ||||||||||
seq2  ACTGGATGG-TTTAGCTTCT  913

seq1: chr9_96718221_96718643
seq2: B6Ng01-001M10.g_721_1127 (reverse)

seq1  GACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACA  50
      |||||||||||||||||||| || ||||| | ||  ||| ||||| |  |
seq2  GACCCAGATGTAGCTGTCTC-TGGGAGAC-AAGC--GGGGCTAGC-AGTA  45

seq1  CAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAA  100
      ||| ||| ||||||| ||||||||||   ||| |||||||||||||||||
seq2  CAG-AGT-GATGCTCCCAGTCAGCTA--TGAT-GATCACAGGGCTCCCAA  90

seq1  TGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTTCAACCCTA  150
      | ||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  T-GAGGAGCTAGAGAAAGTACCCAAGGAGCTAACGGGATC-TCAACCCTA  138

seq1  TAGGTGGAACAACATTATGAACTAACCAGTACCCCTGAGCTCTTGACTCT  200
      |||||||||||||| |||||||||  ||||| ||||||||||||||||||
seq2  TAGGTGGAACAACAGTATGAACTACACAGTA-CCCTGAGCTCTTGACTCT  187

seq1  AGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGA  250
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  AGCTGCATATGTATC-AAAGATGGCCTAGTCGGCCATCACT-GAAAGAGA  235

seq1  GGCCCATTGGACACGCAGACTTTGTGTGCCCCGGTACAGGGGAACGCCAG  300
      || |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GG-CCATTGGACACGCAGACTTTGTGTGCCCCGGTACAGGGGAACACCAG  284

seq1  GGCCAAAGGGGGGAAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAAG  350
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAGGGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAAG  334

seq1  GGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATA  384

seq1  AAAAATGGAAAAAAAAAATAAAA  423
      |||||||||||||||||| ||||
seq2  AAAAATGGAAAAAAAAAAAAAAA  407