BAC Information

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BAC

Clone NameB6Ng01-002I02
Chromosome14 (Build37)
Map Location 49,325,768 - 49,432,855
singlet/doubletdoublet
Overlap geneLOC100041864
Upstream geneKtn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2
Downstream geneLOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002I02.bB6Ng01-002I02.g
ACCDH840507DH840508
length1,114851
definitionDH840507|Mus musculus domesticus DNA, BAC clone: B6Ng01-002I02, 5' end.DH840508|Mus musculus domesticus DNA, BAC clone: B6Ng01-002I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,325,768 - 49,326,880)(49,432,002 - 49,432,855)
sequence
gaattcaacctctgaaacaaaacaaaacaaaacaaaaaacaaaaaacaaa
aaccagcaagggctcttaactctgtccaacctcacaccggtagttcaggc
tggccttgaacttgagatcctcctgcctccatttatttcccttagaactc
taccagagatcatttccatggctggcctggcttgtttctcaaagtggata
taaactatactcaaggaagtgagtatgtagctgagctgcagaatactcac
ggccacaaggccctcggttctagactcagtcctagaaactaaagtaaatg
ttacccataaaaaggaattgacagaatgcttgcctgctgtgcatgaagca
ttgggttcaatcttctatcacataaaccaacatggtggcccaaatttgca
atcccagcactcaggggtaagggaggaaggatcaggatcgacctgggatg
cagtgtctcgacagaaggtcaggttggggatgaggaaagatgttcatttc
tcttggaataacttttatacaagaaaattgaacctggagtggttgttcgt
gcctgtaattttagcattaagaggccgaggcaggagaacatctgtgagtt
ggagggcaacatagtgagtttcagtacaccatgggctagagagactatta
actatctggactatattaaaaaacaaaaacaataacaaaaacaaaaacaa
aaacaaaaacaaaaaaccaacaagctggatttgttgctgcacatctttta
tttagtcccggggctcgggaaggaaagtcaggaaagatctctgagttcga
cgagaccagcctggttctaagagtgaattccaggacagtcagggctagac
agagaaacatacaaaaactaaaaacaaaaacgaaacaaaaccttccagca
accaaaaaggaaagagggggagggacagactagtaggtggaactactata
gagcctagcttatggcttcaggctatccctgtgtgatcacttccactgca
tagtgttccctgggacctactaggttagttagggatatggtcttgtagat
atttaccttaattgacctttttttttttttccactgggaatggaacctcc
aggaccctcctacc
gaattcaactccggtttgagccgcagaataaaaatgagcaaactgtatta
tctgctgccacctaatctgggttgaatttcctctgtatctttttttgttt
gttgaagaatccttttcttgagtctccttggccattgacaaggtcttttg
agatgaatatgaaaagatagatttaaaggttaaggccagggtcagatggt
tgcagatgttttgtgagagattgttcggttcagtttggggtactcctcct
gactaaggtatttcaaactgccagactcatggccagccaccactgaagac
tgttgtttgtctcacgattgatccaacacaaatgaggaataggagtgttt
gttttgtttctttctttcttcagtggataattccctgcgcatgccccctg
ggggctggggggaaggcaaagactgtctaaagccagagaaggtgttgttt
ttattcttagaatgtagactattttaggttttgttcttcaaatgatcatg
ggagaccctttttttttttttttcaaatagagatgaagaatagcatgtga
cagaaatcgattacattcaaaaggttgtaaagttgctggaagagaaaaaa
tataaaggaaagtgataacttatctcttgtctcctgacttcagattctaa
ttaccaaatgatatggaaatgaaggggcaagaactaatgtaggtgacact
agttgtcattgggaattccactatttgatagacttatatcaaaccatagt
cagaatacataggtattaggtggtggtggtttgtgcacctatttgtacat
gtgtatcttgactgtaaagaatacacatagacctacctccatcttatcag
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_49325768_49326880
seq2: B6Ng01-002I02.b_44_1157

seq1  GAATTCAACCTCTGAAACAAAACAAAACAAAACAAAAAACAAAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTCTGAAACAAAACAAAACAAAACAAAAAACAAAAAACAAA  50

seq1  AACCAGCAAGGGCTCTTAACTCTGTCCAACCTCACACCGGTAGTTCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCAAGGGCTCTTAACTCTGTCCAACCTCACACCGGTAGTTCAGGC  100

seq1  TGGCCTTGAACTTGAGATCCTCCTGCCTCCATTTATTTCCCTTAGAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGAACTTGAGATCCTCCTGCCTCCATTTATTTCCCTTAGAACTC  150

seq1  TACCAGAGATCATTTCCATGGCTGGCCTGGCTTGTTTCTCAAAGTGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAGATCATTTCCATGGCTGGCCTGGCTTGTTTCTCAAAGTGGATA  200

seq1  TAAACTATACTCAAGGAAGTGAGTATGTAGCTGAGCTGCAGAATACTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATACTCAAGGAAGTGAGTATGTAGCTGAGCTGCAGAATACTCAC  250

seq1  GGCCACAAGGCCCTCGGTTCTAGACTCAGTCCTAGAAACTAAAGTAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAAGGCCCTCGGTTCTAGACTCAGTCCTAGAAACTAAAGTAAATG  300

seq1  TTACCCATAAAAAGGAATTGACAGAATGCTTGCCTGCTGTGCATGAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCATAAAAAGGAATTGACAGAATGCTTGCCTGCTGTGCATGAAGCA  350

seq1  TTGGGTTCAATCTTCTATCACATAAACCAACATGGTGGCCCAAATTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTCAATCTTCTATCACATAAACCAACATGGTGGCCCAAATTTGCA  400

seq1  ATCCCAGCACTCAGGGGTAAGGGAGGAAGGATCAGGATCGACCTGGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTCAGGGGTAAGGGAGGAAGGATCAGGATCGACCTGGGATG  450

seq1  CAGTGTCTCGACAGAAGGTCAGGTTGGGGATGAGGAAAGATGTTCATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCGACAGAAGGTCAGGTTGGGGATGAGGAAAGATGTTCATTTC  500

seq1  TCTTGGAATAACTTTTATACAAGAAAATTGAACCTGGAGTGGTTGTTCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAATAACTTTTATACAAGAAAATTGAACCTGGAGTGGTTGTTCGT  550

seq1  GCCTGTAATTTTAGCATTAAGAGGCCGAGGCAGGAGAACATCTGTGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAATTTTAGCATTAAGAGGCCGAGGCAGGAGAACATCTGTGAGTT  600

seq1  GGAGGGCAACATAGTGAGTTTCAGTACACCATGGGCTAGAGAGACTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCAACATAGTGAGTTTCAGTACACCATGGGCTAGAGAGACTATTA  650

seq1  ACTATCTGGACTATATTAAAAAACAAAAACAATAACAAAAACAAAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTGGACTATATTAAAAAACAAAAACAATAACAAAAACAAAAACAA  700

seq1  AAACAAAAACAAAAAACCAACAAGCTGGATTTGTTGCTGCACATC-TTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAACAAAAACAAAAAACCAACAAGCTGGATTTGTTGCTGCACATCTTTTA  750

seq1  TTTAGTCCCGGGGCTCGGGAAGGAAAGTCAGG-AAGATCTCTGAGTTCGA  798
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTAGTCCCGGGGCTCGGGAAGGAAAGTCAGGAAAGATCTCTGAGTTCGA  800

seq1  CGAGACCAGCCTGGTTCTAAAGAGTGAATTCCAGGACAGTCAGGGCTAGA  848
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CGAGACCAGCCTGGTTCT-AAGAGTGAATTCCAGGACAGTCAGGGCTAGA  849

seq1  CAGAGAAACATACAAAAACTAAAAACAAAAACGAAACAAAACCTCCAAGC  898
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  CAGAGAAACATACAAAAACTAAAAACAAAAACGAAACAAAACCTTCCAGC  899

seq1  AACCAAAAAGGAAAGAGGGGGAGGGACAGAGTAGTAGGT-GAACTACTAT  947
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  AACCAAAAAGGAAAGAGGGGGAGGGACAGACTAGTAGGTGGAACTACTAT  949

seq1  AGAGCCTAGCTAATGGC-TCAGGCTATCCCTGTGTGGTCACTTCAACTGC  996
      ||||||||||| ||||| |||||||||||||||||| ||||||| |||||
seq2  AGAGCCTAGCTTATGGCTTCAGGCTATCCCTGTGTGATCACTTCCACTGC  999

seq1  ATAGTGTTCCCTGTGTACCTACTATGTTAGTTAGTGATATGGTCTTTGGT  1046
      ||||||||||||| | |||||||| ||||||||| |||||||||||  ||
seq2  ATAGTGTTCCCTG-GGACCTACTAGGTTAGTTAGGGATATGGTCTT--GT  1046

seq1  AGATTATTTAACTAATTTGACTTTTTTTTTTTTTTTACACTGGAAATGGA  1096
      ||| |||||| || | |||||  ||||||||||||| |||||| ||||||
seq2  AGA-TATTTACCTTAATTGAC-CTTTTTTTTTTTTTCCACTGGGAATGGA  1094

seq1  AC--TCAGGA-CCTCCTACC  1113
      ||   ||||| |||||||||
seq2  ACCTCCAGGACCCTCCTACC  1114

seq1: chr14_49432002_49432855
seq2: B6Ng01-002I02.g_68_918 (reverse)

seq1  ACTGTTAAGATGGTAGGTAGGTCTATGTGTATTCTTTAGCAGTC-AGATA  49
      |||| |||||||| |||||||||||||||||||||||| ||||| |||||
seq2  ACTGATAAGATGG-AGGTAGGTCTATGTGTATTCTTTA-CAGTCAAGATA  48

seq1  CACATGTACATATAGTGTGCACAAACCACCACCACCTAAATACCTATGTA  99
      |||||||||| |||| ||||||||||||||||||||| ||||||||||||
seq2  CACATGTACAAATAG-GTGCACAAACCACCACCACCT-AATACCTATGTA  96

seq1  TTCTGACTATGGTTTGATATAAGTCTATCAAATAGTGGAATTCCCAATGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTATGGTTTGATATAAGTCTATCAAATAGTGGAATTCCCAATGA  146

seq1  CAACTAGTGTCACCTACATTAGTTCTTGCCCCTTCATTTCCATATCATTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGTGTCACCTACATTAGTTCTTGCCCCTTCATTTCCATATCATTT  196

seq1  GGTAATTAGAATCTGAAGTCAGGAGACAAGAGATAAGTTATCACTTTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTAGAATCTGAAGTCAGGAGACAAGAGATAAGTTATCACTTTCCT  246

seq1  TTATATTTTTTCTCTTCCAGCAACTTTACAACCTTTTGAATGTAATCGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTTTCTCTTCCAGCAACTTTACAACCTTTTGAATGTAATCGAT  296

seq1  TTCTGTCACATGCTATTCTTCATCTCTATTTGAAAAAAAAAAAAAAAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCACATGCTATTCTTCATCTCTATTTGAAAAAAAAAAAAAAAGGG  346

seq1  TCTCCCATGATCATTTGAAGAACAAAACCTAAAATAGTCTACATTCTAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATGATCATTTGAAGAACAAAACCTAAAATAGTCTACATTCTAAG  396

seq1  AATAAAAACAACACCTTCTCTGGCTTTAGACAGTCTTTGCCTTCCCCCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACAACACCTTCTCTGGCTTTAGACAGTCTTTGCCTTCCCCCCA  446

seq1  GCCCCCAGGGGGCATGCGCAGGGAATTATCCACTGAAGAAAGAAAGAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAGGGGGCATGCGCAGGGAATTATCCACTGAAGAAAGAAAGAAAC  496

seq1  AAAACAAACACTCCTATTCCTCATTTGTGTTGGATCAATCGTGAGACAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACACTCCTATTCCTCATTTGTGTTGGATCAATCGTGAGACAAA  546

seq1  CAACAGTCTTCAGTGGTGGCTGGCCATGAGTCTGGCAGTTTGAAATACCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTCTTCAGTGGTGGCTGGCCATGAGTCTGGCAGTTTGAAATACCT  596

seq1  TAGTCAGGAGGAGTACCCCAAACTGAACCGAACAATCTCTCACAAAACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGGAGGAGTACCCCAAACTGAACCGAACAATCTCTCACAAAACAT  646

seq1  CTGCAACCATCTGACCCTGGCCTTAACCTTTAAATCTATCTTTTCATATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACCATCTGACCCTGGCCTTAACCTTTAAATCTATCTTTTCATATT  696

seq1  CATCTCAAAAGACCTTGTCAATGGCCAAGGAGACTCAAGAAAAGGATTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAAAAGACCTTGTCAATGGCCAAGGAGACTCAAGAAAAGGATTCT  746

seq1  TCAACAAACAAAAAAAGATACAGAGGAAATTCAACCCAGATTAGGTGGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAACAAAAAAAGATACAGAGGAAATTCAACCCAGATTAGGTGGCA  796

seq1  GCAGATAATACAGTTTGCTCATTTTTATTCTGCGGCTCAAACCGGAGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAATACAGTTTGCTCATTTTTATTCTGCGGCTCAAACCGGAGTTG  846

seq1  AATTC  854
      |||||
seq2  AATTC  851