BAC Information

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BAC

Clone NameB6Ng01-003F04
Chromosome14 (Build37)8 (Build37)
Map Location 76,267,913 - 76,268,34074,187,924 - 74,188,752
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852
Downstream geneGtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik, LOC100043753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003F04.bB6Ng01-003F04.g
ACCDH841071DH841072
length1,007829
definitionDH841071|Mus musculus domesticus DNA, BAC clone: B6Ng01-003F04, 5' end.DH841072|Mus musculus domesticus DNA, BAC clone: B6Ng01-003F04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(76,267,913 - 76,268,340)(74,187,924 - 74,188,752)
sequence
gaattctgaaaaagaccacaaaccaccctgaccttgctaggattccttgt
gacattaatagctgtgactgacccataagttcaaatgtactattactttg
ctgaccaaatcataataacccactatgggggcaagcaaagtgagtcacta
ggccaaagggttacttagtcactatacaaaccaaccaatgcctgaaaggg
ttacttgctacaccaatgagaaccctgttgctcaaatctgccccttacaa
aggtataaaaagtgtgttctttctttgttctgggtctctcctctggcctg
tgtgctgggaggggagtccccaacatgttggatcaataaaaatcctcatg
cagtttgcagcaatggcggcggtctctgtggtctttgtgagtgagggtct
tttgacgaactccaacaatggaagcaaattaaagacccagaaataaaccc
gctcatctattgacacttgattttcgacaaagaaggcaatagtacacaat
ggagaaaaaagcatcttcaacaaagattgctgctctgactggatatctgc
atgtaggaaaatgacaatagatccacatctatcactctatacaaaactca
agttcaattgtatcaaagaccacaacataaaactggatacactcaatctt
atagaagaaaaagtagggagtggcctcaaaggcattgtcacaggcttcct
caacagaacaccaagaacttagtcataaagaacaatgaaaaaatagtacc
tcatgaagctgaaaacactctgtaagaaaaaggaaactgtcaaatgcaca
aaatggcaccctacagaaagaaaagattttcaccaatttcacatttccca
gagggctgagatccaaaatatgtagacaactcaagaaagtagacatcaac
aaaccaaataacccaattaaaaattggatacagatctaaagagaattctc
aacacaagagtctctaatgacatagaagttctaatgaaatgttcggcatc
cttagtc
gaattctctggtgaatgctttaaatcactaggtggtgacccaagctgagt
acatgggtagggggagcaagtcttactttccttagacacagcccctgggt
ctctgccaggccctcttctccacctgtcactcacctcattggactggcgg
atggtccgcagcgggatccacacagtacccaccatcgtgtcccagatgag
acccttgttccacacctccacggtcaggcctagatccaggcggttgatct
cactgtgtgcacagcacagggggatgagaaggagagaaggcaggctcaga
gaggtcagtgcgctggcctgaagacacatagcatactgcagtaggaagcc
agacctggaggagccagtgccaagaaaggcaacacactgattcattctat
ggaggggaaactgaggccacagggaagagcttgtagctcagactattgta
ggcacccagagttgaatctggaagagaagggctaggaacagaaggtagca
actcacccttatcttactggccctttgtggggtcatgagaccccagcaag
gctgggcaggcgaggaacacgttcctccctgaccattctcttctggaggt
ataactcggggctcactcttgtaacatgtgacttctctgggcctcccttt
cttcatctattaaatgggactcatggtagcaaccccccagtgcaatgtgc
acagttgatttaaaagaatgaaaataatcacaaaataggatgcacccagg
tgctggacatcagaacagatgtgatgaggaacaggtgtgttggcacacac
ctgtgcgatcagcacgggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_76267913_76268340
seq2: B6Ng01-003F04.b_47_462

seq1  GAATTCTGACAAAGACCACAAACCACCCTGACCTTGTTGTGAGAATTCC-  49
      ||||||||| |||||||||||||||||||||||||| |   || ||||| 
seq2  GAATTCTGAAAAAGACCACAAACCACCCTGACCTTGCT---AGGATTCCT  47

seq1  CCTGACGTTAATAGCTGTGATGTTAATAGCTGACCCATAAGTTCAAAATG  99
        |||| |||||||||||||         ||||||||||||||| |||||
seq2  TGTGACATTAATAGCTGTGA---------CTGACCCATAAGTTC-AAATG  87

seq1  TACTATTACTTTGCTGACCAAATCATAATAACCCACCATGGGGGCAAGCA  149
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TACTATTACTTTGCTGACCAAATCATAATAACCCACTATGGGGGCAAGCA  137

seq1  AAGTGAGTCACTAGGCCAAAGGGTCAGTTAGTCACTATACAAACCAACCA  199
      |||||||||||||||||||||||| | |||||||||||||||||||||||
seq2  AAGTGAGTCACTAGGCCAAAGGGTTACTTAGTCACTATACAAACCAACCA  187

seq1  ATGCCTGAAAGGGTTACTTGCTACACCAATGAGAACCCTGTTGCTCAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGAAAGGGTTACTTGCTACACCAATGAGAACCCTGTTGCTCAAAT  237

seq1  CTGCCCCTTACAAAGGTATAAAAAGTGTGTTCTTTGTTTGTTCTGGGTCT  299
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTGCCCCTTACAAAGGTATAAAAAGTGTGTTCTTTCTTTGTTCTGGGTCT  287

seq1  CTCCTCTGGCCTGCGTGCTGAGAGGGGAGTCCCCAACATGTTGGATCAAT  349
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  CTCCTCTGGCCTGTGTGCTGGGAGGGGAGTCCCCAACATGTTGGATCAAT  337

seq1  AAAAATCCTCATGCGGTTTGCAGCAATGGCAGTGGTCTCTGTGGTCTTTG  399
      |||||||||||||| ||||||||||||||| | |||||||||||||||||
seq2  AAAAATCCTCATGCAGTTTGCAGCAATGGCGGCGGTCTCTGTGGTCTTTG  387

seq1  TGAGTGAGGGTCTTTTGACAAACTCCAAC  428
      ||||||||||||||||||| |||||||||
seq2  TGAGTGAGGGTCTTTTGACGAACTCCAAC  416

seq1: chr8_74187924_74188752
seq2: B6Ng01-003F04.g_68_896

seq1  GAATTCTCTGGTGAATGCTTTAAATCACTAGGTGGTGACCCAAGCTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTGAATGCTTTAAATCACTAGGTGGTGACCCAAGCTGAGT  50

seq1  ACATGGGTAGGGGGAGCAAGTCTTACTTTCCTTAGACACAGCCCCTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGTAGGGGGAGCAAGTCTTACTTTCCTTAGACACAGCCCCTGGGT  100

seq1  CTCTGCCAGGCCCTCTTCTCCACCTGTCACTCACCTCATTGGACTGGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCAGGCCCTCTTCTCCACCTGTCACTCACCTCATTGGACTGGCGG  150

seq1  ATGGTCCGCAGCGGGATCCACACAGTACCCACCATCGTGTCCCAGATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCGCAGCGGGATCCACACAGTACCCACCATCGTGTCCCAGATGAG  200

seq1  ACCCTTGTTCCACACCTCCACGGTCAGGCCTAGATCCAGGCGGTTGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGTTCCACACCTCCACGGTCAGGCCTAGATCCAGGCGGTTGATCT  250

seq1  CACTGTGTGCACAGCACAGGGGGATGAGAAGGAGAGAAGGCAGGCTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTGCACAGCACAGGGGGATGAGAAGGAGAGAAGGCAGGCTCAGA  300

seq1  GAGGTCAGTGCGCTGGCCTGAAGACACATAGCATACTGCAGTAGGAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGTGCGCTGGCCTGAAGACACATAGCATACTGCAGTAGGAAGCC  350

seq1  AGACCTGGAGGAGCCAGTGCCAAGAAAGGCAACACACTGATTCATTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGGAGGAGCCAGTGCCAAGAAAGGCAACACACTGATTCATTCTAT  400

seq1  GGAGGGGAAACTGAGGCCACAGGGAAGAGCTTGTAGCTCAGACTATTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAAACTGAGGCCACAGGGAAGAGCTTGTAGCTCAGACTATTGTA  450

seq1  GGCACCCAGAGTTGAATCTGGAAGAGAAGGGCTAGGAACAGAAGGTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCAGAGTTGAATCTGGAAGAGAAGGGCTAGGAACAGAAGGTAGCA  500

seq1  ACTCACCCTTATCTTACTGGCCCTTTGTGGGGTCATGAGACCCCAGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCCTTATCTTACTGGCCCTTTGTGGGGTCATGAGACCCCAGCAAG  550

seq1  GCTGGGCAGGCGAGGAACACGTTCCTCCCTGACCATTCTCTTCTGGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCAGGCGAGGAACACGTTCCTCCCTGACCATTCTCTTCTGGAGGT  600

seq1  ATAACTCGGGGCTCACTCTTGTAACATGTGACTTCTCTGGGCCTCCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCGGGGCTCACTCTTGTAACATGTGACTTCTCTGGGCCTCCCTTT  650

seq1  CTTCATCTATTAAATGGGACTCATGGTAGCAACCCCCCAGTGCAATGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTATTAAATGGGACTCATGGTAGCAACCCCCCAGTGCAATGTGC  700

seq1  ACAGTTGATTTAAAAGAATGAAAATAATCACAAAATAGGATGCACCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGATTTAAAAGAATGAAAATAATCACAAAATAGGATGCACCCAGG  750

seq1  TGCTGGACATCAGAACAGATGTGATGAGGAACAGGTGTGTTGGCACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGACATCAGAACAGATGTGATGAGGAACAGGTGTGTTGGCACACAC  800

seq1  CTGTGCGATCAGCACGGGGGGGGGGGGGG  829
      |||||||||||||||||||||||||||||
seq2  CTGTGCGATCAGCACGGGGGGGGGGGGGG  829