BAC Information

Click to search

BAC

Clone NameB6Ng01-003N01
Chromosome14 (Build37)
Map Location 30,380,695 - 30,516,271
singlet/doubletdoublet
Overlap geneCacna2d3
Upstream geneLrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003N01.bB6Ng01-003N01.g
ACCDH841409DH841410
length1,1391,130
definitionDH841409|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N01, 5' end.DH841410|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,380,695 - 30,381,828)(30,515,145 - 30,516,271)
sequence
gaattcactaccaagatcacgttagatgtttacaagtgtacatgctgtga
acatgaagactctaagtgtcttgactcacagctgtctgggtctatgtgct
acgggggcctcagaggtctgcaatgatctgcacagtattctgcacttcta
tattggcaccactgttctgcatacctcatgctttgtcccttacctgatgt
caatcattcaggggactatgagcataccaactcaatcttcaatcttaaaa
caaaggggcagggggaaaaagaacaaacttgtatttttacagctctaaac
cacagctctctgtattggtttactgcaaaaaaaaaaaaaaaactaatatc
cattacaaaaaatgtattgcatatattcaaaatggaaaagtcagtggaaa
ttctacaacattaccacacccgatagcaaaaaaacatgcctttaagatct
gagtgtgtggtcagcatattttgttgaaagtcgaacatacacatttgaaa
gaaatcaaaattgttctgtgcatgccattttttatgtaagctttcttata
tttaataaaaggctttctatgtcattaagtagttttctgtcacccttgct
tttattagccacgctctgatgccctggggcctctctgggaatcctgctct
tttgaatactgtaaaagctaaaagacagtcagcaatgactaatgtacata
aagtgtagaaggaggtctgactctgcgctgtttgctatatactcttagct
ccctttagggcagtgtgggatacaggtcccattatcaggcctcagaagaa
ttcctggactgatcagtctaacttccaatgaccactgtggatccagactc
agcatccctcctggcaggctacactacacaatatcttttctccttactga
caatctgtgcagccatcaataaaacatcactgcacaactgggacctgcca
caaatcctctgaggtgtgcaaggctcccatgtgatggccacaggcacaac
atctatgtaagctgtttcttgcttcagcagtttgagatgaagattgccct
cattacagatctgccacgtctgagcaggcttccaggatttggcctcctcc
tcttgagactcactctctgtgtaattcatgaagcacagt
gaattcttgccactcagataatcggtttcccttccttttggttgttttgg
cgtgatgccagtcaaagaaacctttgtgtcagagagtgcaggcgccttgt
ttacagttctgaaattgcagccttttctttggttctgtacaggatagagt
tcgaaggtccttccgtgtggagcttctgctgcagagggctggagatcaga
cctcatttgtttcccagtctgctcttcagtaggtgggggcccttccttca
tttcatatgatactagcacccctctttctaccagcagcacctgcctctcc
tctgtccacagctggcatctgcaggaggacagggaaatgtggagttgccg
ctggctctacccagctttgtaggctggcaccagactcgccagggagggct
cagtcgaatggccaaaagagaggattaaaacagctccagtaggaaggaaa
gcagaagtgatactcgattttagtaacaaaaaaaactacatttctgctat
cattctcccccaagagtccttgtaccgtagccttgttctttgagctgtgt
atgagaatggagtcatctctgaatataaaaggcaagaatatagggactaa
aatatttgacatatgatgaaattttgtggtattttagacagtgagtaaat
tgatatttatataacccagtatattcatttctcccgaaccatccttcctt
gaatgtggacttaataacacgcttgactaaatgacattaattgctttaaa
ctgccaaattaaaaaaaaatccagtctagattcaacaagtgtgctgtatt
cacagctcaggctagaggtggggaaaaagaacagttcttctgagtgtctc
agaggcaatgtccccgtgagccctctaccaatatcgggacaatggacaaa
cgagcttcatgaggctagatctagaaaatggcttcacattctggctctac
tggtgggcaggatgtggcctcgcagtttcttagctctctattttcttcat
cttgaaatgacctctattctttcctgaattgctggtgattataattaaga
tcacgagatagatatagcctcagtgtctgggagtttttagaaattcacag
gtagcagcaaccatcattttcagcttttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30380695_30381828
seq2: B6Ng01-003N01.b_47_1185

seq1  GAATTCACTACCAAGATCACGTTAGATGTTTACAAGTGTACATGCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACCAAGATCACGTTAGATGTTTACAAGTGTACATGCTGTGA  50

seq1  ACATGAAGACTCTAAGTGTCTTGACTCACAGCTGTCTGGGTCTATGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAGACTCTAAGTGTCTTGACTCACAGCTGTCTGGGTCTATGTGCT  100

seq1  ACGGGGGCCTCAGAGGTCTGCAATGATCTGCACAGTATTCTGCACTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGGCCTCAGAGGTCTGCAATGATCTGCACAGTATTCTGCACTTCTA  150

seq1  TATTGGCACCACTGTTCTGCATACCTCATGCTTTGTCCCTTACCTGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCACCACTGTTCTGCATACCTCATGCTTTGTCCCTTACCTGATGT  200

seq1  CAATCATTCAGGGGACTATGAGCATACCAACTCAATCTTCAATCTTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATTCAGGGGACTATGAGCATACCAACTCAATCTTCAATCTTAAAA  250

seq1  CAAAGGGGCAGGGGGAAAAAGAACAAACTTGTATTTTTACAGCTCTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGGCAGGGGGAAAAAGAACAAACTTGTATTTTTACAGCTCTAAAC  300

seq1  CACAGCTCTCTGTATTGGTTTACTGCAAAAAAAAAAAAAAAACTAATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCTCTGTATTGGTTTACTGCAAAAAAAAAAAAAAAACTAATATC  350

seq1  CATTACAAAAAATGTATTGCATATATTCAAAATGGAAAAGTCAGTGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAAAAAATGTATTGCATATATTCAAAATGGAAAAGTCAGTGGAAA  400

seq1  TTCTACAACATTACCACACCCGATAGCAAAAAAACATGCCTTTAAGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAACATTACCACACCCGATAGCAAAAAAACATGCCTTTAAGATCT  450

seq1  GAGTGTGTGGTCAGCATATTTTGTTGAAAGTCGAACATACACATTTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTGGTCAGCATATTTTGTTGAAAGTCGAACATACACATTTGAAA  500

seq1  GAAATCAAAATTGTTCTGTGCATGCCATTTTTTATGTAAGCTTTCTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAAAATTGTTCTGTGCATGCCATTTTTTATGTAAGCTTTCTTATA  550

seq1  TTTAATAAAAGGCTTTCTATGTCATTAAGTAGTTTTCTGTCACCCTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAAAGGCTTTCTATGTCATTAAGTAGTTTTCTGTCACCCTTGCT  600

seq1  TTTATTAGCCACGCTCTGATGCCCTGGGGCCTCTCTGGGAATCCTGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGCCACGCTCTGATGCCCTGGGGCCTCTCTGGGAATCCTGCTCT  650

seq1  TTTGAATACTGTAAAAGCTAAAAGACAGTCAGCAATGACTAATGTACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATACTGTAAAAGCTAAAAGACAGTCAGCAATGACTAATGTACATA  700

seq1  AAGTGTAGAAGGAGGTCTGACTCTGCGCTGTTTGCTATATACTCTTAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGAAGGAGGTCTGACTCTGCGCTGTTTGCTATATACTCTTAGCT  750

seq1  CCCTTTAGGGCAGTGTGGGATACAGGTCCCATTATCAGGCCTCAGAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAGGGCAGTGTGGGATACAGGTCCCATTATCAGGCCTCAGAAGAA  800

seq1  TTCCTGGACTGATCAGTCTAACTTCCAATGACCACTGTGGATCCAGACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGACTGATCAGTCTAACTTCCAATGACCACTGTGGATCCAGACTC  850

seq1  AGCATCCCTCCTGGCAGGCTACACTACACAATATCTTTTCTCCTTACTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCCTCCTGGCAGGCTACACTACACAATATCTTTTCTCCTTACTGA  900

seq1  CAATCTGTGCAGCCATCAATAAAACATCACTGCACTACT-GGACCTGCCA  949
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  CAATCTGTGCAGCCATCAATAAAACATCACTGCACAACTGGGACCTGCCA  950

seq1  CAAATCCTCTGAGGTGTGCAAGGCTCCCATGTGATGGCCACAGGCAC-AC  998
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAATCCTCTGAGGTGTGCAAGGCTCCCATGTGATGGCCACAGGCACAAC  1000

seq1  ATCTATGTAAGCTG-TTCTTGC-TCAGCAGTTTGAAGAATGAAGAATTGC  1046
      |||||||||||||| ||||||| ||||||||||||   ||||||| |  |
seq2  ATCTATGTAAGCTGTTTCTTGCTTCAGCAGTTTGA--GATGAAGATTGCC  1048

seq1  CTCATTACAGATCTGCCACGTCTGAGCAGGC-TCCAGAATTT-GCCTCCT  1094
      ||||||||||||||||||||||||||||||| ||||| |||| |||||||
seq2  CTCATTACAGATCTGCCACGTCTGAGCAGGCTTCCAGGATTTGGCCTCCT  1098

seq1  -CTCCTGAGAACTCACTCTCCGTG-AATTCATGAAGCACAGT  1134
       ||| |||| |||||||||| ||| |||||||||||||||||
seq2  CCTCTTGAG-ACTCACTCTCTGTGTAATTCATGAAGCACAGT  1139

seq1: chr14_30515145_30516271
seq2: B6Ng01-003N01.g_70_1199 (reverse)

seq1  GTAAAAGTTG-AAATGATGGTTGCTGCTAACTGTTGGATTTCT-AAGACT  48
      ||||||| || |||||||||||||||||| ||| || |||||| || |||
seq2  GTAAAAGCTGAAAATGATGGTTGCTGCTACCTG-TGAATTTCTAAAAACT  49

seq1  TCCAGACACTGA-GCTATATCTTATCTTCGTGATCTAATTTATATTCA-C  96
       ||||||||||| |||||||| |||| ||||||||| | ||||| ||| |
seq2  CCCAGACACTGAGGCTATATC-TATC-TCGTGATCTTAATTATAATCACC  97

seq1  AGCAATTCAGGAAAAGATAGAGGTCATTTCAAGATGAAGAAAATAGAGAG  146
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  AGCAATTCAGGAAAGAATAGAGGTCATTTCAAGATGAAGAAAATAGAGAG  147

seq1  CTAAGAAACTGCGAGGCCACATCCTGCCCACCAGTAGAGCCAGAATGTGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAACTGCGAGGCCACATCCTGCCCACCAGTAGAGCCAGAATGTGA  197

seq1  AGCCA-TTTCTAGATCTAGCCTCATGAAGCTCGTTTGTCCATTGTCCCGA  245
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTTCTAGATCTAGCCTCATGAAGCTCGTTTGTCCATTGTCCCGA  247

seq1  TATTGGTAGAGGGCTCACGGGGACATTGCCTCTGAGACACTCAG-AGGAC  294
      |||||||||||||||||||||||||||||||||||||||||||| || ||
seq2  TATTGGTAGAGGGCTCACGGGGACATTGCCTCTGAGACACTCAGAAGAAC  297

seq1  TGTTCTTTTTCCCCACCTCTAGCCTGAGCTGTGAATACAGCACACTTGTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTTTCCCCACCTCTAGCCTGAGCTGTGAATACAGCACACTTGTT  347

seq1  GAATCTAGACTGGATTTTTTTTTAATTTGGCAGTTTAAAGCAATTAATGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAGACTGGATTTTTTTTTAATTTGGCAGTTTAAAGCAATTAATGT  397

seq1  CATTTAGTCAAGCGTGTTATTAAGTCCACATTCAAGGAAGGATGGTTCGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTCAAGCGTGTTATTAAGTCCACATTCAAGGAAGGATGGTTCGG  447

seq1  GAGAAATGAATATACTGGGTTATATAAATATCAATTTACTCACTGTCTAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGAATATACTGGGTTATATAAATATCAATTTACTCACTGTCTAA  497

seq1  AATACCACAAAATTTCATCATATGTCAAATATTTTAGTCCCTATATTCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCACAAAATTTCATCATATGTCAAATATTTTAGTCCCTATATTCTT  547

seq1  GCCTTTTATATTCAGAGATGACTCCATTCTCATACACAGCTCAAAGAACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTATATTCAGAGATGACTCCATTCTCATACACAGCTCAAAGAACA  597

seq1  AGGCTACGGTACAAGGACTCTTGGGGGAGAATGATAGCAGAAATGTAGTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACGGTACAAGGACTCTTGGGGGAGAATGATAGCAGAAATGTAGTT  647

seq1  TTTTTTGTTACTAAAATCGAGTATCACTTCTGCTTTCCTTCCTACTGGAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTACTAAAATCGAGTATCACTTCTGCTTTCCTTCCTACTGGAG  697

seq1  CTGTTTTAATCCTCTCTTTTGGCCATTCGACTGAGCCCTCCCTGGCGAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAATCCTCTCTTTTGGCCATTCGACTGAGCCCTCCCTGGCGAGT  747

seq1  CTGGTGCCAGCCTACAAAGCTGGGTAGAGCCAGCGGCAACTCCACATTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCCAGCCTACAAAGCTGGGTAGAGCCAGCGGCAACTCCACATTTC  797

seq1  CCTGTCCTCCTGCAGATGCCAGCTGTGGACAGAGGAGAGGCAGGTGCTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTCCTGCAGATGCCAGCTGTGGACAGAGGAGAGGCAGGTGCTGC  847

seq1  TGGTAGAAAGAGGGGTGCTAGTATCATATGAAATGAAGGAAGGGCCCCCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAAAGAGGGGTGCTAGTATCATATGAAATGAAGGAAGGGCCCCCA  897

seq1  CCTACTGAAGAGCAGACTGGGAAACAAATGAGGTCTGATCTCCAGCCCTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGAAGAGCAGACTGGGAAACAAATGAGGTCTGATCTCCAGCCCTC  947

seq1  TGCAGCAGAAGCTCCACACGGAAGGACCTTCGAACTCTATCCTGTACAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGAAGCTCCACACGGAAGGACCTTCGAACTCTATCCTGTACAGA  997

seq1  ACCAAAGAAAAGGCTGCAATTTCAGAACTGTAAACAAGGCGCCTGCACTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGAAAAGGCTGCAATTTCAGAACTGTAAACAAGGCGCCTGCACTC  1047

seq1  TCTGACACAAAGGTTTCTTTGACTGGCATCACGCCAAAACAACCAAAAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACACAAAGGTTTCTTTGACTGGCATCACGCCAAAACAACCAAAAGG  1097

seq1  AAGGGAAACCGATTATCTGAGTGGCAAGAATTC  1127
      |||||||||||||||||||||||||||||||||
seq2  AAGGGAAACCGATTATCTGAGTGGCAAGAATTC  1130