BAC Information

Click to search

BAC

Clone NameB6Ng01-004O17
Chromosome14 (Build37)
Map Location 89,242,834 - 89,243,950
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004O17.bB6Ng01-004O17.g
ACCDH842201DH842202
length1,1081,158
definitionDH842201|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O17, 5' end.DH842202|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttggggttatatattttaaaatataaatatattttattaaacca
tatattaaaatatattttatataaaatatattttattaaaacaagttttg
ataaaattaatattttggagcaaatataacaatgtaagctgagtaaataa
tttatacatatgagataaaaatctatgatattttcctttgaataatcagt
ctatgtataataaacttgataaaatttacatttttttgtatatagctatc
tcctagaatgaccaaggaatttaaaagacttaagaatttgttttagataa
ctctcttgaaaaacaaataagcattttttaaatgtgaaggaaaataaaaa
cctccgagtttcctttagtaacttgaaagttttagctattatagaaagat
tcctccttagaaaacacgcaattgtaattcaatggatcatgaagaaacct
gctgcgaaaagacattttgaaacattcctaatttttgctggtgtattgta
gctcatttcaatatgtcagtgatcctaatttagagctctgaaatcagagt
aatctgaattgaatggctgcttactgtcaaagccaggaagacattaacta
ctcagtatactcaacatttatacagtgtagtcaggaggcaaagagccagg
attcagatgagaacatgggcaaattattattccaggggttccctattgtg
ggatgtagatatttcatctggtattaacacagcctcctgggatttcatac
cctctcacataaaaaaacggtgattacctgctcagtttgactcgaatctt
catattgggaaaagaacaacagattatgcaagcattccagtaaccattat
gaaaatcattattgtaaatcaaaaatttgtaattgttttgtgaatcagaa
aataataatttcttgtcctaatcattagccaagtcatattcctgaaatat
acattgtactgattgcttaaattgtgttactatataaggtttccttctct
gttcaaattgtgtctgatttccctcataacctgattatatacatgttcgt
catcttttgatagcatttctagcttcagattattaagtcagaattttaat
ttcttttt
gaattctcacctgaggaataacaaatggctgagaagcacctgaaaaaaat
gttcaacatccttaatcctcagggaaatgcaaatcaaaacaactctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgtggatgtggagaaagaggaacactcctccattgttggt
ggaattgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactaccagaggatccagcaatacctctcctggg
catatatccagaagatgccccaactggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatttacacaat
ggaatactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacccaatcagaa
aggaactttcacaatatgtactcactgataagttgatatcagcccgtaaa
cttaggatacccaagatataagatacaatttgctaaacacattaaactca
agagaacgaagaccaaagtgtggacactttgccccttcttagaataggaa
agaaaacacccatggaaggagttacagagacaaaatttgtaagtgtgacg
aaaggatgaaccatctagtgattgccatatccagagatccatcccatgat
cagcttccaaacactgacaccattgcatacactagcaagattttgctgaa
aggacccagatatagctgtctcttgtgggactatgccagggccctagcaa
cacagaattggatgctcacagtcagctatgaatggaccacagggccccaa
tgaggaactagagaagcacccaagactaaagggactgtaccttatagtga
aaacaatatggactaccagtacccggagctcttgtctctagctgcattgt
atcaaagatgcctagttgcatcactgccaagagagcccactggacttgcc
aactttataacagttataagtaatgctcagccgaaattgtggcagatgtg
tgttggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89242834_89243950
seq2: B6Ng01-004O17.b_46_1153

seq1  GAATTCTTGGGGTTATATATTTTAAAATATAAATATATTTTATTAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGGTTATATATTTTAAAATATAAATATATTTTATTAAACCA  50

seq1  TATATTAAAATATATTTTATATAAAATATATTTTATTAAAACAAGTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAAAATATATTTTATATAAAATATATTTTATTAAAACAAGTTTTG  100

seq1  ATAAAATTAATATTTTGGAGCAAATATAACAATGTAAGCTGAGTAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTAATATTTTGGAGCAAATATAACAATGTAAGCTGAGTAAATAA  150

seq1  TTTATACATATGAGATAAAAATCTATGATATTTTCCTTTGAATAATCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACATATGAGATAAAAATCTATGATATTTTCCTTTGAATAATCAGT  200

seq1  CTATGTATAATAAACTTGATAAAATTTACATTTTTTTGTATATAGCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATAATAAACTTGATAAAATTTACATTTTTTTGTATATAGCTATC  250

seq1  TCCTAGAATGACCAAGGAATTTAAAAGACTTAAGAATTTGTTTTAGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAATGACCAAGGAATTTAAAAGACTTAAGAATTTGTTTTAGATAA  300

seq1  CTCTCTTGAAAAACAAATAAGCATTTTTTAAATGTGAAGGAAAATAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGAAAAACAAATAAGCATTTTTTAAATGTGAAGGAAAATAAAAA  350

seq1  CCTCCGAGTTTCCTTTAGTAACTTGAAAGTTTTAGCTATTATAGAAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGAGTTTCCTTTAGTAACTTGAAAGTTTTAGCTATTATAGAAAGAT  400

seq1  TCCTCCTTAGAAAACACGCAATTGTAATTCAATGGATCATGAAGAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTAGAAAACACGCAATTGTAATTCAATGGATCATGAAGAAACCT  450

seq1  GCTGCGAAAAGACATTTTGAAACATTCCTAATTTTTGCTGGTGTATTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGAAAAGACATTTTGAAACATTCCTAATTTTTGCTGGTGTATTGTA  500

seq1  GCTCATTTCAATATGTCAGTGATCCTAATTTAGAGCTCTGAAATCAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTCAATATGTCAGTGATCCTAATTTAGAGCTCTGAAATCAGAGT  550

seq1  AATCTGAATTGAATGGCTGCTTACTGTCAAAGCCAGGAAGACATTAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAATTGAATGGCTGCTTACTGTCAAAGCCAGGAAGACATTAACTA  600

seq1  CTCAGTATACTCAACATTTATACAGTGTAGTCAGGAGGCAAAGAGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATACTCAACATTTATACAGTGTAGTCAGGAGGCAAAGAGCCAGG  650

seq1  ATTCAGATGAGAACATGGGCAAATTATTATTCCAGGGGTTCCCTATTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATGAGAACATGGGCAAATTATTATTCCAGGGGTTCCCTATTGTG  700

seq1  GGATGTAGATATTTCATCTGGTATTAACACAGCCTCCTGGGATTTCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTAGATATTTCATCTGGTATTAACACAGCCTCCTGGGATTTCATAC  750

seq1  CCTCTCACATAAAAAAACGGTGATTACCTGCTCAGTTTGACTCGAATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCACATAAAAAAACGGTGATTACCTGCTCAGTTTGACTCGAATCTT  800

seq1  CATATTGGGAAAAGAACAACAGATTATGCAAGCATTCCAGTAACCATTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGGGAAAAGAACAACAGATTATGCAAGCATTCCAGTAACCATTAT  850

seq1  GAAAAATCATTATTGTAAATCAAAAATTTGTAAATTGTTTTGTGAATCAG  900
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  G-AAAATCATTATTGTAAATCAAAAATTTGT-AATTGTTTTGTGAATCAG  898

seq1  AAAATAATAAATTTCTTGTCCTAATCATTAGCCAAGTCATATTCCTGAAA  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAT-AATTTCTTGTCCTAATCATTAGCCAAGTCATATTCCTGAAA  947

seq1  TATACATTGTACTGATTGCTTAAATTGTGTTACTAATATAA-GTTTCCTT  999
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  TATACATTGTACTGATTGCTTAAATTGTGTTACT-ATATAAGGTTTCCTT  996

seq1  CTCTGTTCAAAATTGTGTCTTATTTCCCTCAT-ACCTGATTCATATACAT  1048
      |||||||| ||||||||||| ||||||||||| |||||||| ||||||||
seq2  CTCTGTTC-AAATTGTGTCTGATTTCCCTCATAACCTGATT-ATATACAT  1044

seq1  GTTCCTCAATCCTTTTGATAGCATTTCTAGCTTCAGATTATTTAGGTCAA  1098
      |||| |||   ||||||||||||||||||||||||||||| ||| ||| |
seq2  GTTCGTCA--TCTTTTGATAGCATTTCTAGCTTCAGATTA-TTAAGTC-A  1090

seq1  GAATTTTAATTTTCTTTTT  1117
      ||||||||| |||||||||
seq2  GAATTTTAA-TTTCTTTTT  1108