BAC Information

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BAC

Clone NameB6Ng01-005C21
Chromosome14 (Build37)
Map Location 43,973,866 - 44,106,855
singlet/doubletdoublet
Overlap gene1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502
Upstream geneLOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485
Downstream geneLOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005C21.bB6Ng01-005C21.g
ACCDH842388DH842389
length9901,097
definitionDH842388|Mus musculus domesticus DNA, BAC clone: B6Ng01-005C21, 5' end.DH842389|Mus musculus domesticus DNA, BAC clone: B6Ng01-005C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,973,866 - 43,974,871)(44,105,758 - 44,106,855)
sequence
gaattctttgctatggtttgacacaattcaaagggactggtaaaactgtt
ggtccagtaccttcaagagctttttagctactccttgagaagtttcctct
tctttattttattttattagatattttcttcatttacacttaaaatgtta
tccctaaagttccctatacccttcccccaccccgccaccctgctccccta
cccactccctcccacttcttggcctaaaatcagggcagctgttctcaaga
taggatatcgttcccaacccctgtggctaatcaggtacctcagcacatac
tgcagtcctcctggctctggatggcataagctagccagccatgctgtgct
tgaagggcaatagcagctagtatctgatgtgatgcaagtaagtcctggat
tccctagtgcttagcaccaccaagctgtgattgcctgtgtctaagatgaa
agtagtaaatgtctcagaacttgaaatatgtccaggggtatattttcttg
atttttactatcagacatccatggaacttaaagcaatacagcaaggatga
attgtagcaaaagcctacagacatggactcctcatagaggaccaattgtg
tgtgtgtgcctgtgtgtgtgtttgtgtgtgtgtgtatgtctgtgtgtgtg
tatgtgcttgtgtcccccatgggtctatgcatccttggaatctggagtct
acagtggggcctgttgcaaggtgatgctgtgtccatgcacagggaacccc
acctttagtcagcactgctcttttgtctatatgttcacctcggtggcaca
ttgaaatcccatgaggattatatatagccattcctgatattgagtcttct
tcccaacaatactgttttttttttcctttctttttttttttttttttttt
gcccgggtagctgtgtagcattagatctacaacttgaaaattgtgttctg
aagatatagtttttaaaaatgggtacaggttgacatgggc
gaattctttgcatacttctatgactgtgaaagactggggaaattcctagg
aactggagtgtgaagtgagactaagtacaaggtctattggcacagaaatc
aaatattgaaacagcttagaagacagatcaggacaaaatatattgagtcc
agactgatgctgggaggtcaatgaataatccagagaacattgcctcagta
agaaaggagcagggaggagaggtacttgggcaggtcttgaagttagcctt
tgctaaaaatgagtaaaaaataaaattttcacagtcggtgcattcataca
ggaaaggaggagatgactcagtcactaaaggtcctgagaggccacactga
gctggcattcatgaactctccattatttagtaagaacaactgcacttgat
taagatgcttacatgacctttacacccagcacttccctctctgctactat
ctgtcatggtggaggatcttctcagggttgtctcttctgagctgtcagga
cactggcaggttttcctgtcacctgttatggtctcaacaaagtctcctct
caccagccagaaaatctcttcttgacatttgaggctcattgtgaggtaga
aagagaatggaaacaatctacaccattacagatgaggcctttggaaggca
atgtgggtttagataatgtcatcagagtaatttcttacctttttacaaaa
gccttctaaacaaatggttccctaggatagtttcctaaccagagagcatg
atagcatgcggcttatgtatttgcaatatgaagtgtgggagacaggctgc
tgattttagatagtctttaattagaccattgctggccttgtacacaatcc
actaacttgggcaagggttgactttggatcccaatagcaacccttatata
tttgaatatcaataatttagaaccactttcttcaattctaaagtagtaag
tggcttcaagtctaaatattactttacttctcttaggtagtatgtaagta
atgaatatcatggtgtacatgatttaattttcccaccaaggaaaaaggat
ggttgcctttctttttcttgaactactggtttaatgggacaatgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43973866_43974871
seq2: B6Ng01-005C21.b_43_1032

seq1  GAATTCTTTGCTATGGTTTGACACAATTCAAAGGGACTGGTAAAACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTATGGTTTGACACAATTCAAAGGGACTGGTAAAACTGTT  50

seq1  GGTCCAGTACCTTCAAGAGCTTTTTAGCTACTCCTTGAGAAGTTTCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGTACCTTCAAGAGCTTTTTAGCTACTCCTTGAGAAGTTTCCTCT  100

seq1  TCTTTATTTTATTTTATTAGATATTTTCTTCATTTACACTTAAAATGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTTATTTTATTAGATATTTTCTTCATTTACACTTAAAATGTTA  150

seq1  TCCCTAAAGTTCCCTATACCCTTCCCCCACCCCGCCACCCTGCTCCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAAGTTCCCTATACCCTTCCCCCACCCCGCCACCCTGCTCCCCTA  200

seq1  CCCACTCCCTCCCACTTCTTGGCCTAAAATCAGGGCAGCTGTTCTCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCCTCCCACTTCTTGGCCTAAAATCAGGGCAGCTGTTCTCAAGA  250

seq1  TAGGATATCGTTCCCAACCCCTGTGGCTAATCAGGTACCTCAGCACATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATATCGTTCCCAACCCCTGTGGCTAATCAGGTACCTCAGCACATAC  300

seq1  TGCAGTCCTCCTGGCTCTGGATGGCATAAGCTAGCCAGCCATGCTGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCCTCCTGGCTCTGGATGGCATAAGCTAGCCAGCCATGCTGTGCT  350

seq1  TGAAGGGCAATAGCAGCTAGTATCTGATGTGATGCAAGTAAGTCCTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGCAATAGCAGCTAGTATCTGATGTGATGCAAGTAAGTCCTGGAT  400

seq1  TCCCTAGTGCTTAGCACCACCAAGCTGTGATTGCCTGTGTCTAAGATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGTGCTTAGCACCACCAAGCTGTGATTGCCTGTGTCTAAGATGAA  450

seq1  AGTAGTAAATGTCTCAGAACTTGAAATATGTCCAGGGGTATATTTTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAAATGTCTCAGAACTTGAAATATGTCCAGGGGTATATTTTCTTG  500

seq1  ATTTTTACTATCAGACATCCATGGAACTTAAAGCAATACAGCAAGGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACTATCAGACATCCATGGAACTTAAAGCAATACAGCAAGGATGA  550

seq1  ATTGTAGCAAAAGCCTACAGACATGGACTCCTCATAGAGGACCAATTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGCAAAAGCCTACAGACATGGACTCCTCATAGAGGACCAATTGTG  600

seq1  TGTGTGTGCCTGTGTGTGTGTTTGTGTGTGTGTGTATGTCTGTGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCCTGTGTGTGTGTTTGTGTGTGTGTGTATGTCTGTGTGTGTG  650

seq1  TATGTGCTTGTGTCCCCCATGGGTCTATGCATCCTTGGAATCTGGAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTTGTGTCCCCCATGGGTCTATGCATCCTTGGAATCTGGAGTCT  700

seq1  ACAGTGGGGCCTGTTGCAAGGTGATGCTGTGTCCATGCACAGGGAACCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGGGCCTGTTGCAAGGTGATGCTGTGTCCATGCACAGGGAACCCC  750

seq1  ACC-TTAGTCAGCACTGCTC-TTTGTCTATATGTTCACCTCGGTGGCACA  798
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCTTTAGTCAGCACTGCTCTTTTGTCTATATGTTCACCTCGGTGGCACA  800

seq1  TTGAAATCCCATGAGGATTATATATAGCCA-TCCTGATATTGAGTC-TCC  846
      |||||||||||||||||||||||||||||| ||||||||||||||| || 
seq2  TTGAAATCCCATGAGGATTATATATAGCCATTCCTGATATTGAGTCTTCT  850

seq1  TCCCAACAAATACTGTTTTTTTTTTCCTTTTCTTTTTTTTTTTTTTTTTT  896
      ||||||| |||||||||||||||||||             ||| ||||||
seq2  TCCCAAC-AATACTGTTTTTTTTTTCC-------------TTTCTTTTTT  886

seq1  TTTTTTTTTTTTTTGCTCTGGGTAGCTGTGTAGCAATAAGAACCTACAAC  946
      |||||||||||||||| | |||||||||||||||| ||   | |||||||
seq2  TTTTTTTTTTTTTTGC-CCGGGTAGCTGTGTAGCATTA--GATCTACAAC  933

seq1  -TGAGAATCTGTGTTCTGAAGATATATTTTTTAAAAAAGTGGTAACAGGG  995
       ||| ||| ||||||||||||||||| ||||||||||  |||  ||| ||
seq2  TTGAAAAT-TGTGTTCTGAAGATATAGTTTTTAAAAA--TGGGTACA-GG  979

seq1  TTGACATGGGC  1006
      |||||||||||
seq2  TTGACATGGGC  990

seq1: chr14_44105758_44106855
seq2: B6Ng01-005C21.g_70_1166 (reverse)

seq1  CATCATTGGTTCCATTTAACCAGTTAGGTCCAAGAAAAAGAAA-GCAA-C  48
      ||||||| || ||||| |||||||   || ||||||||||||| |||| |
seq2  CATCATT-GTCCCATTAAACCAGT--AGTTCAAGAAAAAGAAAGGCAACC  47

seq1  ATTCTTTTT-CTTGGTGGGAAAAATTAAATCATTGTTACACAATGATA-T  96
      || |||||| ||||||||| |||||||||||||   ||||| |||||| |
seq2  ATCCTTTTTCCTTGGTGGG-AAAATTAAATCAT--GTACACCATGATATT  94

seq1  CATTACTTACATACTAACTTAAGAGAAGGTAAAGGTAAATTATTTTAGAC  146
      ||||||||||||||| || |||||||| ||||| ||||  || |||||||
seq2  CATTACTTACATACT-ACCTAAGAGAA-GTAAA-GTAA--TA-TTTAGAC  138

seq1  TTGAAG-CACTTACTACTTTTAGAAATGAAG-AAGTGGTTCTTAATTATT  194
      |||||| |||||||||| ||||||| ||||| |||||||||| |||||||
seq2  TTGAAGCCACTTACTAC-TTTAGAATTGAAGAAAGTGGTTCTAAATTATT  187

seq1  GATATTCAAATATAT-AGGGTTGCTATTGGGATCCAAAGTCAA-CCTTGA  242
      ||||||||||||||| ||||||||||||||||||||||||||| ||||| 
seq2  GATATTCAAATATATAAGGGTTGCTATTGGGATCCAAAGTCAACCCTTGC  237

seq1  CCAAGTTAGTGGATTGTGTACAAGGCCAGC-ATGGTCTACTT-AAGACTA  290
      |||||||||||||||||||||||||||||| |||||||| || |||||||
seq2  CCAAGTTAGTGGATTGTGTACAAGGCCAGCAATGGTCTAATTAAAGACTA  287

seq1  TCTAAAATCAGCAGCCTGTCTCCCACACTTCATATTGCAAATACATAAGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATCAGCAGCCTGTCTCCCACACTTCATATTGCAAATACATAAGC  337

seq1  CGCATGCTATCATGCTCTCTGGTTAGGAAACTATCCTAGGGAACCATTTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGCTATCATGCTCTCTGGTTAGGAAACTATCCTAGGGAACCATTTG  387

seq1  TTTAGAAGGCTTTTGT-AAAAGGTAAG-AATTACTCTGATGACATTATCT  438
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  TTTAGAAGGCTTTTGTAAAAAGGTAAGAAATTACTCTGATGACATTATCT  437

seq1  -AACCCACATTGCCTTCCAAAGGCCTCATCTGTAATGGTGTAGATTGTTT  487
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCACATTGCCTTCCAAAGGCCTCATCTGTAATGGTGTAGATTGTTT  487

seq1  CCATTCTCTTTCTACCTCACAATGAGCCTCAAATGTCAAGAAGAGATTTT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCTTTCTACCTCACAATGAGCCTCAAATGTCAAGAAGAGATTTT  537

seq1  CTGGCTGGTGAGAGGAGACTTTGTTGAGACCATAACAGGTGACAGGAAAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGTGAGAGGAGACTTTGTTGAGACCATAACAGGTGACAGGAAAA  587

seq1  CCTGCCAGTGTCCTGACAGCTCAGAAGAGACAACCCTGAGAAGATCCTCC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGTGTCCTGACAGCTCAGAAGAGACAACCCTGAGAAGATCCTCC  637

seq1  ACCATGACAGATAGTAGCAGAGAGGGAAGTGCTGGGTGTAAAGGTCATGT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACAGATAGTAGCAGAGAGGGAAGTGCTGGGTGTAAAGGTCATGT  687

seq1  AAGCATCTTAATCAAGTGCAGTTGTTCTTACTAAATAATGGAGAGTTCAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTTAATCAAGTGCAGTTGTTCTTACTAAATAATGGAGAGTTCAT  737

seq1  GAATGCCAGCTCAGTGTGACCTCTCAGGACCTTTAGTGACTGAGTCATCT  787
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAATGCCAGCTCAGTGTGGCCTCTCAGGACCTTTAGTGACTGAGTCATCT  787

seq1  CCTCCTTTCCTGTATGAATGCACTGACTGTGAAAATTATATTTTTTACTC  837
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  CCTCCTTTCCTGTATGAATGCACCGACTGTGAAAATTTTATTTTTTACTC  837

seq1  ATTTTTAGCAAAGGCTAACTTCAAGACCTGCCCAAGTACCTCTCCTCCCT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGCAAAGGCTAACTTCAAGACCTGCCCAAGTACCTCTCCTCCCT  887

seq1  GCTCCTTTCTTACTGAGGCAATGTTCTCTGGATTATTCATTGACCTCCCA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTCTTACTGAGGCAATGTTCTCTGGATTATTCATTGACCTCCCA  937

seq1  GCATCAGTCTGGACTCAATATATTTTGTCCTGATCTGTCTTCTAAGCTGT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGTCTGGACTCAATATATTTTGTCCTGATCTGTCTTCTAAGCTGT  987

seq1  TTCAATATTTGATTTCTGTGCCAATAGACCTTGTACTTAGTCTCACTTCA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATTTGATTTCTGTGCCAATAGACCTTGTACTTAGTCTCACTTCA  1037

seq1  CACTCCAGTTCCTAGGAATTTCCCCAGTCTTTCACAGTCATAGAAGTATG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGTTCCTAGGAATTTCCCCAGTCTTTCACAGTCATAGAAGTATG  1087

seq1  CAAAAGAATTC  1098
      | |||||||||
seq2  C-AAAGAATTC  1097