BAC Information

Click to search

BAC

Clone NameB6Ng01-005E11
Chromosome14 (Build37)
Map Location 123,089,430 - 123,267,408
singlet/doubletdoublet
Overlap genePcca
Upstream geneDock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847
Downstream geneBC006662, 4930594M22Rik, Tmtc4, Vgcnl1, Itgbl1, LOC668700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005E11.bB6Ng01-005E11.g
ACCDH842456DH842457
length929901
definitionDH842456|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E11, 5' end.DH842457|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,089,430 - 123,090,349)(123,266,507 - 123,267,408)
sequence
gaattcaaaattgagcctcgctccctcccttcctctttccctcccttcct
ctttccctctctccctccctctttcccttcgtccctctttcccttccttc
cctccctccctccctgacttccttccttcctgacttccttcctttaattc
actacatcctgatcacagcccttttcttaacaatgaactctaattaaaca
aaccagtgagcagtacgtgtgtcaggtgctgtggagaaactggtcctgta
ttggttaagagtacttttgctctttgaaggttttccaatctacaacttga
gtggatttgacttttgttgtttacactatggctggagcctagagccgggt
gtatctcaggcaggcaccataccactgagccaccactcaacccagctaac
ttttatagaaaagtacaataggatttggcccatgtgtctttttaaacttt
gcagattaaagttgaaaatcacgagtctctaaaatactaagatctcataa
atagtaaaatgttgcaatttgaaaatgctttgtctctgaaatagtagctt
tgcctcaaagaccgattaacttcaagttttcttttagttttgtgctggag
atgaaacaggaatcctgcaagttttgtgcaaggtttctgctgtggcccac
gttttctagtgccctgagtgctctcttatgtagctatagctgctcgaaac
aagccattttaatctttgtagttttcttttttcactgtttttaaccattt
aatatttttttaaataaaccttagatgtttttgccttatttcagaaacac
ttataaaagtagaaatacataaaatttacaaattgatttttcaaatgaac
tgtttctttttaagatgattgtatgttttctagaaaaatggccttataat
tttcctagcgggcctctatggtgtaaagt
gaattctttgctcatctcaagtgggtatactgttatcacaggatgtggaa
caaatggactctgtggaaaacagatggggagcttggccttccttccccca
tcaattcttcaacaccagaggctgggaatgaagccaatgctgggcctctt
caacagcactctggcctgtgtgtggatgatttcaataataaaaagttttc
actattatgaattcattgaagaaactcagaatcaaatgggataaaatgtt
ggcttatgtctgacagaaattaccaaactagcttgtagaaagacagggta
aacaccgccagagatgattgtggcatataatcctgttggccaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaatcaaatcaggaaacacctccacaag
ccttcacacagcgctccaaagcaccacaaatgacctctgtcaggggattg
cttagcagttctgcagttcaaaatgtaatacatcttgcaagcccagcctg
tgtccgtagacaatctgctggcattccatgtgggaaatattgtacacata
caatactgattgtatgacaagaccctgcaaagccttgtgggtaatatgga
agggaaaggagacaaagtcccagaacataatagcagcaaaatggaatctt
attccataaacctgaatttgagagctgggaaagatgctaccctttggcta
aagatggtggcacatacctgtaatcccatcactggggagtggagacaaag
gaatccagagtcatctggactatacaaggaggcttaataagactggtctc
aaaaattttctaagatgtaaattttttcacccaaatctatttctcagaca
aaatttattctcttaaatcaagatataccttctttttaaaagttataatt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_123089430_123090349
seq2: B6Ng01-005E11.b_43_971

seq1  GAATTCAAAATTGAGCCTCGCTCCCTCCCTTCCTCTTTCCCTCCCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATTGAGCCTCGCTCCCTCCCTTCCTCTTTCCCTCCCTTCCT  50

seq1  CTTTCCCTCTCTCCCTCCCTCTTTCCCTTCGTCCCTCTTTCCCTTCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTCTCTCCCTCCCTCTTTCCCTTCGTCCCTCTTTCCCTTCCTTC  100

seq1  CCTCCCTCCCTCCCTGACTTCCTTCCTTCCTGACTTCCTTCCTTTAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCTCCCTGACTTCCTTCCTTCCTGACTTCCTTCCTTTAATTC  150

seq1  ACTACATCCTGATCACAGCCCTTTTCTTAACAATGAACTCTAATTAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATCCTGATCACAGCCCTTTTCTTAACAATGAACTCTAATTAAACA  200

seq1  AACCAGTGAGCAGTACGTGTGTCAGGTGCTGTGGAGAAACTGGTCCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTGAGCAGTACGTGTGTCAGGTGCTGTGGAGAAACTGGTCCTGTA  250

seq1  TTGGTTAAGAGTACTTTTGCTCTTTGAAGGTTTTCCAATCTACAACTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAAGAGTACTTTTGCTCTTTGAAGGTTTTCCAATCTACAACTTGA  300

seq1  GTGGATTTGACTTTTGTTGTTTACACTATGGCTGGAGCCTAGAGCCGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTGACTTTTGTTGTTTACACTATGGCTGGAGCCTAGAGCCGGGT  350

seq1  GTATCTCAGGCAGGCACCATACCACTGAGCCACCACTCAACCCAGCTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCAGGCAGGCACCATACCACTGAGCCACCACTCAACCCAGCTAAC  400

seq1  TTTTATAGAAAAGTACAATAGGATTTGGCCCATGTGTCTTTTTAAACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGAAAAGTACAATAGGATTTGGCCCATGTGTCTTTTTAAACTTT  450

seq1  GCAGATTAAAGTTGAAAATCACGAGTCTCTAAAATACTAAGATCTCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTAAAGTTGAAAATCACGAGTCTCTAAAATACTAAGATCTCATAA  500

seq1  ATAGTAAAATGTTGCAATTTGAAAATGCTTTGTCTCTGAAATAGTAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAAATGTTGCAATTTGAAAATGCTTTGTCTCTGAAATAGTAGCTT  550

seq1  TGCCTCAAAGACCGATTAACTTCAAGTTTTCTTTTAGTTTTGTGCTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAAGACCGATTAACTTCAAGTTTTCTTTTAGTTTTGTGCTGGAG  600

seq1  ATGAAACAGGAATCCTGCAAG-TTTGTGCAAGG-TTCTGCTGTGGCCCAC  648
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  ATGAAACAGGAATCCTGCAAGTTTTGTGCAAGGTTTCTGCTGTGGCCCAC  650

seq1  G-TTTCTAGTGCCCTGAGTGCTCTCTTATGTAGCTATAGCTGC-CGAAAC  696
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTTTCTAGTGCCCTGAGTGCTCTCTTATGTAGCTATAGCTGCTCGAAAC  700

seq1  AAGCCATTTTAATCTTTGTAGTTTTCTTTTTTCACTGTTTTTAACCA-TT  745
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGCCATTTTAATCTTTGTAGTTTTCTTTTTTCACTGTTTTTAACCATTT  750

seq1  AATA-TTTTTTAAATAAACCTTAGATGTTTT--GCTTATTACAGAAACAC  792
      |||| ||||||||||||||||||||||||||   |||||| |||||||||
seq2  AATATTTTTTTAAATAAACCTTAGATGTTTTTGCCTTATTTCAGAAACAC  800

seq1  ATATAAAAGTAGAAATACATAAAATATTACAAATTGA-TTTTCAAATGAA  841
       |||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TTATAAAAGTAGAAATACATAAAAT-TTACAAATTGATTTTTCAAATGAA  849

seq1  CTGTTTCTTTTTTAGATGAATGTATGTTTGTCTAGAAAAATGGCC-TATA  890
      |||||||||||| |||||| ||||||||| ||||||||||||||| ||||
seq2  CTGTTTCTTTTTAAGATGATTGTATGTTT-TCTAGAAAAATGGCCTTATA  898

seq1  AATTTTCTAGCTGGCTCATAT-GTGTAAAGT  920
      | ||| ||||| |||   ||| |||||||||
seq2  ATTTTCCTAGCGGGCCTCTATGGTGTAAAGT  929

seq1: chr14_123266507_123267408
seq2: B6Ng01-005E11.g_68_968 (reverse)

seq1  AAATTAATAACCTTTTAAAAAG-AGGTATAATCTTGATTTAAGAGAATAA  49
      ||||| |||| ||||||||||| |||||| ||||||||||||||||||||
seq2  AAATT-ATAA-CTTTTAAAAAGAAGGTAT-ATCTTGATTTAAGAGAATAA  47

seq1  ATTTTTGTCTGAGAAATTAGATTT-GGTCGAAAAATTATCATCTTAAGAA  98
      | |||||||||||||| ||||||| |||  |||||||  |||||||  ||
seq2  A-TTTTGTCTGAGAAA-TAGATTTGGGTGAAAAAATTTACATCTTAGAAA  95

seq1  ATTTTCGAGA-CAGTCTTATTAAGCCTCATTGTATAGTCCAGATGACTCT  147
      ||||| |||| ||||||||||||||||| |||||||||||||||||||||
seq2  ATTTTTGAGACCAGTCTTATTAAGCCTCCTTGTATAGTCCAGATGACTCT  145

seq1  GGATTCCTTCTGTCTCCACCTCCCCAGTGCTGGGATTACAGGTATGTGCC  197
      ||||||||| |||||||| |||||||||| ||||||||||||||||||||
seq2  GGATTCCTT-TGTCTCCA-CTCCCCAGTGATGGGATTACAGGTATGTGCC  193

seq1  ACCATCTTTAGCCAAA-GGTAGCATCTTTCCCAGCTCTCAAATTCAGGTT  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACCATCTTTAGCCAAAGGGTAGCATCTTTCCCAGCTCTCAAATTCAGGTT  243

seq1  TATGGAATAAGATTCCA-TTTGCTGCTATTATGTTCTGGGACTTTGTCTC  295
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATGGAATAAGATTCCATTTTGCTGCTATTATGTTCTGGGACTTTGTCTC  293

seq1  CTTTCCCTTCCATATTACCCACAAGGCTTTGCA-GGTCTTGTCATACAAT  344
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTTCCCTTCCATATTACCCACAAGGCTTTGCAGGGTCTTGTCATACAAT  343

seq1  CAGTATTGTATGTGTACAATATTTCCCACATGGAATGCCAGCAGATTGTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGTATGTGTACAATATTTCCCACATGGAATGCCAGCAGATTGTC  393

seq1  TACGGACACAGGCTGGGCTTGCAAGATGTATTACATTCTGAACTGCAGAA  444
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACGGACACAGGCTGGGCTTGCAAGATGTATTACATTTTGAACTGCAGAA  443

seq1  CTGCTAAGCAATCCCCTGACAGAGGTCATTTGTGGTGCTTTGGAGCGCTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGCAATCCCCTGACAGAGGTCATTTGTGGTGCTTTGGAGCGCTG  493

seq1  TGTGAAGGCTTGTGGAGGTGTTTCCTGATTTGATTTTTTTTTTTTTTTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGCTTGTGGAGGTGTTTCCTGATTTGATTTTTTTTTTTTTTTTT  543

seq1  TTTTTTTTTTTTTTTTTGGCCAACAGGATTATATGCCACAATCATCTCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTGGCCAACAGGATTATATGCCACAATCATCTCTG  593

seq1  GCGGTGTTTACCCTGTCTTTCTACAAGCTAGTTTGGTAATTTCTGTCAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGTTTACCCTGTCTTTCTACAAGCTAGTTTGGTAATTTCTGTCAGA  643

seq1  CATAAGCCAACATTTTATCCCATTTGATTCTGAGTTTCTTCAATGAATTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCCAACATTTTATCCCATTTGATTCTGAGTTTCTTCAATGAATTC  693

seq1  ATAATAGTGAAAACTTTTTATTATTGAAATCATCCACACACAGGCCAGAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTGAAAACTTTTTATTATTGAAATCATCCACACACAGGCCAGAG  743

seq1  TGCTGTTGAAGAGGCCCAGCATTGGCTTCATTCCCAGCCTCTGGTGTTGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTGAAGAGGCCCAGCATTGGCTTCATTCCCAGCCTCTGGTGTTGA  793

seq1  AGAATTGATGGGGGAAGGAAGGCCAAGCTCCCCATCTGTTTTCCACAGAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGATGGGGGAAGGAAGGCCAAGCTCCCCATCTGTTTTCCACAGAG  843

seq1  TCCATTTGTTCCACATCCTGTGATAACAGTATACCCACTTGAGATGAGCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGTTCCACATCCTGTGATAACAGTATACCCACTTGAGATGAGCA  893

seq1  AAGAATTC  902
      ||||||||
seq2  AAGAATTC  901