BAC Information

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BAC

Clone NameB6Ng01-005H14
Chromosome14 (Build37)
Map Location 86,727,683 - 86,893,437
singlet/doubletdoublet
Overlap geneLOC100043778, LOC100043310
Upstream geneLOC668603, LOC100043301, EG629815, LOC100043306
Downstream geneLOC100043311, Diap3, EG665324, Tdrd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005H14.bB6Ng01-005H14.g
ACCDH842599DH842600
length1,0501,051
definitionDH842599|Mus musculus domesticus DNA, BAC clone: B6Ng01-005H14, 5' end.DH842600|Mus musculus domesticus DNA, BAC clone: B6Ng01-005H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,727,683 - 86,728,726)(86,892,382 - 86,893,437)
sequence
gaattcaccatgtggtgtgtccatccatcgaaatacctactgaagtgtct
aatgagaagagagctctgtattacacatttcaagggaatctaaaaaaaaa
aaattaaataaataaataacagactctgtgactcactattcatctgagaa
gacaaaaagcaaaacataaaatgaagaatatctctactgtgtagcataac
aacaaagagacggtgttagtatggcaaagcacagtttattaatagcataa
gatcacaatgtaaaaattcctaatggtagtgttcaattaaaggagaggga
atctactcgggttgggttgagaacatggctttaatcatttgtgcttgcca
aaaaaagaaaaaaaaaagaacactttttttttctttcagaagagtaactg
atggagaacagctatgaaaattcacaggcgagtggagtgtgttgctgaga
ggtgccacatcagaatgcaagcagctacaagtcgaagggaaacatcactg
acagaagctcaaagcagtgagaagaacgtcagcccagtggacaacaagat
atctggacagtcgctgtaattctcttggtatgcatgtatgtatgtatgta
tgcatgtatgtatgtatgtacgtatttatttatttagacagggtctcact
atgtagtcctggctatcctggaacttggtgtgtataacatgatgatggct
aggtattaaagaagttcaccaacacacccagattggctcttcctctggat
tccaagacggcaactgtagctccagtccttagaatgccattgaagttcat
tgttttaaagaaataaaaataataaataaaagtatagggagacaaaatta
agaaattaagcttattaagggtcttctacctcgtgtgcatgttccacttg
tatttcattggccagaacctgttttctcatgctttgagtgaggaggccaa
cagttaagccaggagcttctccagtctagaataggtgcccgaccaaagga
aagaaagcctggctgtcttctagagactatgtctttccaccacttgacag

gaattcattagctcaacacgtagggatcacagggacttgaaaactcatat
ttagagaaccgggtggataatttacaaccaagtgtggaaaagagctatgg
cgatggcaaggtatggagacgtgggtggagactgcaataaagacaagtaa
caattcggagctattggcctactgtgaagcttgctagtccaattagccac
aaaggattttcagttattcttttaaaaattctgttgtggctgagaactgg
tcagaactaactctctgatttcactgtcacaaattgaactgtgatgggca
gaatcaatggccccactgtcttatgatatctgcatctgaatctctaaata
ttccaggaatattctatgcgaaaaaggaactttgaaaactggatacatta
tgtgtatcctgagatagtaaaattatccttgattattgggagtccaggga
agtatgtgggggaaattacatgacatcttaaaagcagagaattatttcct
gactagaattcagtaatggatgaagaaaagaatgaatgcaaacattaaaa
tctcaaatatgagaaggttttgacctatctttgttggctttgaacatgga
agaaagaaactgtaagccaagatggggtgagctctggacactatgaagag
acttagcctactgccagcgaagaaatcagtatctcagccctacaatagca
aggatgggaattatgcttgatgtgacatcagacaaagaaacagcccaccc
acccccttgcaaagcatgcttgaagtaatgtagtcctggttccttgattt
ttaccaaggccagaccaatatcaaagatgggggaatgatgattgtgaact
gtgctaacgtcatatgtatttggttttgttacatagaaataaatacactt
ccctagaagaaagtggtgggtgtaaatggataacctgccagactgaaata
ctgaatgggtggaagagcagaggaagattgggaacacagtgtagctttca
tggacccagtaagaaggagaagaataggtggacttatgtggggtggtata
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_86727683_86728726
seq2: B6Ng01-005H14.b_45_1094

seq1  GAATTCACCATGTGGTGTGTCCATCCATCGAAATACCTACTGAAGTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATGTGGTGTGTCCATCCATCGAAATACCTACTGAAGTGTCT  50

seq1  AATGAGAAGAGAGCTCTGTATTACACATTTCAAGGGAATCTAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAGAGAGCTCTGTATTACACATTTCAAGGGAATCTAAAAAAAAA  100

seq1  AAATTAAATAAATAAATAACAGACTCTGTGACTCACTATTCATCTGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATAAATAAATAACAGACTCTGTGACTCACTATTCATCTGAGAA  150

seq1  GACAAAAAGCAAAACATAAAATGAAGAATATCTCTACTGTGTAGCATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAAGCAAAACATAAAATGAAGAATATCTCTACTGTGTAGCATAAC  200

seq1  AACAAAGAGACGGTGTTAGTATGGCAAAGCACAGTTTATTAATAGCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAGACGGTGTTAGTATGGCAAAGCACAGTTTATTAATAGCATAA  250

seq1  GATCACAATGTAAAAATTCCTAATGGTAGTGTTCAATTAAAGGAGAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAATGTAAAAATTCCTAATGGTAGTGTTCAATTAAAGGAGAGGGA  300

seq1  ATCTACTCGGGTTGGGTTGAGAACATGGCTTTAATCATTTGTGCTTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTCGGGTTGGGTTGAGAACATGGCTTTAATCATTTGTGCTTGCCA  350

seq1  AAAAAAGAAAAAAAAAAGAACACTTTTTTTTTCTTTCAGAAGAGTAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAAAAAAAGAACACTTTTTTTTTCTTTCAGAAGAGTAACTG  400

seq1  ATGGAGAACAGCTATGAAAATTCACAGGCGAGTGGAGTGTGTTGCTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAACAGCTATGAAAATTCACAGGCGAGTGGAGTGTGTTGCTGAGA  450

seq1  GGTGCCACATCAGAATGCAAGCAGCTACAAGTCGAAGGGAAACATCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCACATCAGAATGCAAGCAGCTACAAGTCGAAGGGAAACATCACTG  500

seq1  ACAGAAGCTCAAAGCAGTGAGAAGAACGTCAGCCCAGTGGACAACAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCTCAAAGCAGTGAGAAGAACGTCAGCCCAGTGGACAACAAGAT  550

seq1  ATCTGGACAGTCGCTGTAATTCTCTTGGTATGCATGTATGTATGTATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGACAGTCGCTGTAATTCTCTTGGTATGCATGTATGTATGTATGTA  600

seq1  TGCATGTATGTATGTATGTACGTATTTATTTATTTAGACAGGGTCTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTATGTATGTATGTACGTATTTATTTATTTAGACAGGGTCTCACT  650

seq1  ATGTAGTCCTGGCTATCCTGGAACTTGGTGTGTATAACATGATGATGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTCCTGGCTATCCTGGAACTTGGTGTGTATAACATGATGATGGCT  700

seq1  AGGTATTAAAGAAGTTCACCAACACACCCAGATTGGCTCTTCCTCTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTAAAGAAGTTCACCAACACACCCAGATTGGCTCTTCCTCTGGAT  750

seq1  TCCAAGACGGCAACTGTAGCTCCAGTCCTTAGAATGCCATTGAAGTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGACGGCAACTGTAGCTCCAGTCCTTAGAATGCCATTGAAGTTCAT  800

seq1  TGTTTTAAAGAAATAAAAATAATAAATAAAAGTATAGGGAGACAAAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAAGAAATAAAAATAATAAATAAAAGTATAGGGAGACAAAATTA  850

seq1  AGAAATTAAGCTTATTAAGGGTC-TCTACCTCGTGTGCATG-TCCACTTG  898
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  AGAAATTAAGCTTATTAAGGGTCTTCTACCTCGTGTGCATGTTCCACTTG  900

seq1  TATTTCATTGGCCAGAA-CTG-TTTCTCATGC-CTGAGTGAGGAGGCCAA  945
      ||||||||||||||||| ||| ||||||||||  ||||||||||||||||
seq2  TATTTCATTGGCCAGAACCTGTTTTCTCATGCTTTGAGTGAGGAGGCCAA  950

seq1  CAGGTAAGCCAGGAGCTTCTCCAGTCTAGAATAGGTGCCCGACCAAAGGA  995
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGCCAGGAGCTTCTCCAGTCTAGAATAGGTGCCCGACCAAAGGA  1000

seq1  AGGAAAGCCTGGCTGTCTCCTAGAGACTATGTC-TTCCACCACTGGACAG  1044
      | |||||||||||||||| |||||||||||||| |||||||||| |||||
seq2  AAGAAAGCCTGGCTGTCTTCTAGAGACTATGTCTTTCCACCACTTGACAG  1050

seq1: chr14_86892382_86893437
seq2: B6Ng01-005H14.g_69_1119 (reverse)

seq1  TTAT-CCACCCCAACACTAAGTCCACCCTATTCTTCTCCTTCTTACTTGG  49
      |||| ||||||| ||| |||||||| |||||||||||||||||||||  |
seq2  TTATACCACCCC-ACA-TAAGTCCA-CCTATTCTTCTCCTTCTTACT--G  45

seq1  GTTCCATGAAAGCTACACTGTGTTCCCAATCTTCCTCTGCTTCTTCCACC  99
      | |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTCCATGAAAGCTACACTGTGTTCCCAATCTTCCTCTGC-TCTTCCACC  94

seq1  CATTCAGTATTTCAGTCTGGCAGGTTATCCATTTACA-CCACCACTTTCT  148
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATTCAGTATTTCAGTCTGGCAGGTTATCCATTTACACCCACCACTTTCT  144

seq1  TCTAGGGAAGTGTATTTATTTCTATTGTAACAAAACCAAATACATATGAC  198
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTAGGGAAGTGTATTTATTTCTA-TGTAACAAAACCAAATACATATGAC  193

seq1  GTTAGCACAGTTCACATTCATCATTCCCCCATCTTTGATATTGGTCTGGC  248
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTAGCACAGTTCACAATCATCATTCCCCCATCTTTGATATTGGTCTGGC  243

seq1  CTTGGTAAAAATCAAGGAACCAGGACTACATTACTTCAAGCATGCTTTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAAAAATCAAGGAACCAGGACTACATTACTTCAAGCATGCTTTGC  293

seq1  AAGGGGGTGGGTGGGCTGTTTCTTTGTCTGATGTCACATCAAGCATAATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGTGGGTGGGCTGTTTCTTTGTCTGATGTCACATCAAGCATAATT  343

seq1  CCCATCCTTGCTATTGTAGGGCTGAGATACTGATTTCTTCGCTGGCAGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTTGCTATTGTAGGGCTGAGATACTGATTTCTTCGCTGGCAGTA  393

seq1  GGCTAAGTCTCTTCATAGTGTCCAGAGCTCACCCCATCTTGGCTTACAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGTCTCTTCATAGTGTCCAGAGCTCACCCCATCTTGGCTTACAGT  443

seq1  TTCTTTCTTCCATGTTCAAAGCCAACAAAGATAGGTCAAAACCTTCTCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTCCATGTTCAAAGCCAACAAAGATAGGTCAAAACCTTCTCAT  493

seq1  ATTTGAGATTTTAATGTTTGCATTCATTCTTTTCTTCATCCATTACTGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGATTTTAATGTTTGCATTCATTCTTTTCTTCATCCATTACTGAA  543

seq1  TTCTAGTCAGGAAATAATTCTCTGCTTTTAAGATGTCATGTAATTTCCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTCAGGAAATAATTCTCTGCTTTTAAGATGTCATGTAATTTCCCC  593

seq1  CACATACTTCCCTGGACTCCCAATAATCAAGGATAATTTTACTATCTCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACTTCCCTGGACTCCCAATAATCAAGGATAATTTTACTATCTCAG  643

seq1  GATACACATAATGTATCCAGTTTTCAAAGTTCCTTTTTCGCATAGAATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACATAATGTATCCAGTTTTCAAAGTTCCTTTTTCGCATAGAATAT  693

seq1  TCCTGGAATATTTAGAGATTCAGATGCAGATATCATAAGACAGTGGGGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAATATTTAGAGATTCAGATGCAGATATCATAAGACAGTGGGGCC  743

seq1  ATTGATTCTGCCCATCACAGTTCAATTTGTGACAGTGAAATCAGAGAGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTCTGCCCATCACAGTTCAATTTGTGACAGTGAAATCAGAGAGTT  793

seq1  AGTTCTGACCAGTTCTCAGCCACAACAGAATTTTTAAAAGAATAACTGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGACCAGTTCTCAGCCACAACAGAATTTTTAAAAGAATAACTGAA  843

seq1  AATCCTTTGTGGCTAATTGGACTAGCAAGCTTCACAGTAGGCCAATAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTGTGGCTAATTGGACTAGCAAGCTTCACAGTAGGCCAATAGCT  893

seq1  CCGAATTGTTACTTGTCTTTATTGCAGTCTCCACCCACGTCTCCATACCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATTGTTACTTGTCTTTATTGCAGTCTCCACCCACGTCTCCATACCT  943

seq1  TGCCATCGCCATAGCTCTTTTCCACACTTGGTTGTAAATTATCCACCCGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCGCCATAGCTCTTTTCCACACTTGGTTGTAAATTATCCACCCGG  993

seq1  TTCTCTAAATATGAGTTTTCAAGTCCCTGTGATCCCTACGTGTTGAGCTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAATATGAGTTTTCAAGTCCCTGTGATCCCTACGTGTTGAGCTA  1043

seq1  ATGAATTC  1056
      ||||||||
seq2  ATGAATTC  1051