BAC Information

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BAC

Clone NameB6Ng01-005J06
Chromosome14 (Build37)
Map Location 45,737,272 - 45,738,329
singlet/doubletsinglet
Overlap genenone
Upstream gene4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591
Downstream gene5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005J06.bB6Ng01-005J06.g
ACCDH842676DH842677
length1,0621,136
definitionDH842676|Mus musculus domesticus DNA, BAC clone: B6Ng01-005J06, 5' end.DH842677|Mus musculus domesticus DNA, BAC clone: B6Ng01-005J06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacgcaacctgtcacccaactcttcctattcgcctgcagtctat
aggcaagccctttgactacgtttagcatccttggagtcagagttttggct
ctgaggaacaagagctttagaaaaccctctttacccaggaggccaatttc
ttttcaattgagttggggatcagcctcatttgtgtggcctcgtggctggc
aagggagtgggtgatgaacaaaggatctgttttatggagagctcgcctat
taagttggaaatcttggtgactttcttagcttttgaatactgagtatgct
tcatagtgctaccaggaaaattaaagcgctgcttaaggcaaggcttcaca
cttgggagactgtgtataatccaaggcaacgtgagctaatattcttgtgc
gttcagagtaaaggaagttccccgtcaatcctttctgcagcaactatcgt
acagaggcttagaaattaacatcagtgttggtgatgtaaaatgttcacag
tatagaattttagagtataccagagataaactacaagaaggggttttaaa
ccaacaggtaagatgttctgctatgctttaaaataaagagacctaaaaat
aacattagccctccatgacttcttgagttaccttaggaagcattgtggga
atctgtctccttcttctaggaacactggcagaagcgtggcacactttgac
aaggaaccagagaacggacaatggtgtataaatatcatctctgtccttcc
caccattagttgcttcctggaactggaataattgtggtgctcaggcagct
tgctgagttcccgatttgactatttatactgcagcggaaaaaaacagtat
tctgctagctgggaaaattactgcaggaaatgacttctgccctaaagagt
attctgattcattatagcttccaggataaagcaatcactacaactttaaa
gtctctgggaggtttaaatctacttaagctaatgtaaaccaaggagtagt
agaaaggaggcctttcattctacgtgactgtggactgatatgtcttttgg
gggtaagggacc
gaattcaaatagatccatatttattaccctgcacaaaactcaagtccaac
tggatcaatgaactcaacataaaaccagatacactaaatctaatagaaaa
gaaattgggaaatagccttgaacgcattggtacaggggacaatttcctga
acagaacaccaatggctcaggctctaagatgaacaattgacaaatggaaa
ctcatgaaactgaaaagcttctgtaaggcaaaggacactgtcaataggac
aaaacagcagcctccgaattgggaaatcactaaccctacatcttatagag
gtctaatatccaaaatatataaagaactcaagaagttaagactccaaaaa
accaaataacccaattaaaaatgggatacagggctaaacagagaattctc
aacaacaacaacaacaaaaaaatcgcaaatggctgaaaatcacttaagga
aatcttcaacatctgtagtcaccagagaaatgcaaatcaaaatgaccatg
agattccaccttacaccactcagaatggctaagattgaaaactcaggtga
cagcacatgtcagagaggatgtggaaaagaggaacactcctccattgctg
gtggaattgcaaacttgtacaactactctggaaatcaacctggtggtttc
ttagaaaattggaaatagttctacctgaggacccagctatattgctcctg
ggaatatacccaaaagacgttccaccatatcacaaggacaggtgttctac
tatttttatagtggctttattcgtaacagccaggaactgaaaacaaccca
aatgtccttcaaccgaagaatggatacagaaaatgtggttcatttacaga
atgggaatattattcaactataacaacaggacatcatgaatttttgcggc
aaatggatggaactagaaaatattattcggagtgagatacccagacccaa
aaggacatgcatggtatgtactactgatagtggatattagccataaatac
aggatgcctatactatacccttacgacccagagtaacaggagggagtcca
gcagatgctggatctcctaaggtaatgcatagagcgaggagggaggactg
ataggagaactcctgggctgggtgaggtgcgtgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_45737272_45738329
seq2: B6Ng01-005J06.b_45_1106

seq1  GAATTCAACGCAACCTGTCACCCAACTCTTCCTATTCGCCTGCAGTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACGCAACCTGTCACCCAACTCTTCCTATTCGCCTGCAGTCTAT  50

seq1  AGGCAAGCCCTTTGACTACGTTTAGCATCCTTGGAGTCAGAGTTTTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCCCTTTGACTACGTTTAGCATCCTTGGAGTCAGAGTTTTGGCT  100

seq1  CTGAGGAACAAGAGCTTTAGAAAACCCTCTTTACCCAGGAGGCCAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAACAAGAGCTTTAGAAAACCCTCTTTACCCAGGAGGCCAATTTC  150

seq1  TTTTCAATTGAGTTGGGGATCAGCCTCATTTGTGTGGCCTCGTGGCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTGAGTTGGGGATCAGCCTCATTTGTGTGGCCTCGTGGCTGGC  200

seq1  AAGGGAGTGGGTGATGAACAAAGGATCTGTTTTATGGAGAGCTCGCCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGTGGGTGATGAACAAAGGATCTGTTTTATGGAGAGCTCGCCTAT  250

seq1  TAAGTTGGAAATCTTGGTGACTTTCTTAGCTTTTGAATACTGAGTATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGGAAATCTTGGTGACTTTCTTAGCTTTTGAATACTGAGTATGCT  300

seq1  TCATAGTGCTACCAGGAAAATTAAAGCGCTGCTTAAGGCAAGGCTTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTGCTACCAGGAAAATTAAAGCGCTGCTTAAGGCAAGGCTTCACA  350

seq1  CTTGGGAGACTGTGTATAATCCAAGGCAACGTGAGCTAATATTCTTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGACTGTGTATAATCCAAGGCAACGTGAGCTAATATTCTTGTGC  400

seq1  GTTCAGAGTAAAGGAAGTTCCCCGTCAATCCTTTCTGCAGCAACTATCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGTAAAGGAAGTTCCCCGTCAATCCTTTCTGCAGCAACTATCGT  450

seq1  ACAGAGGCTTAGAAATTAACATCAGTGTTGGTGATGTAAAATGTTCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCTTAGAAATTAACATCAGTGTTGGTGATGTAAAATGTTCACAG  500

seq1  TATAGAATTTTAGAGTATACCAGAGATAAACTACAAGAAGGGGTTTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATTTTAGAGTATACCAGAGATAAACTACAAGAAGGGGTTTTAAA  550

seq1  CCAACAGGTAAGATGTTCTGCTATGCTTTAAAATAAAGAGACCTAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGGTAAGATGTTCTGCTATGCTTTAAAATAAAGAGACCTAAAAAT  600

seq1  AACATTAGCCCTCCATGACTTCTTGAGTTACCTTAGGAAGCATTGTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAGCCCTCCATGACTTCTTGAGTTACCTTAGGAAGCATTGTGGGA  650

seq1  ATCTGTCTCCTTCTTCTAGGAACACTGGCAGAAGCGTGGCACACTTTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTCCTTCTTCTAGGAACACTGGCAGAAGCGTGGCACACTTTGAC  700

seq1  AAGGAACCAGAGAACGGACAATGGTGTATAAATATCATCTCTGTCCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCAGAGAACGGACAATGGTGTATAAATATCATCTCTGTCCTTCC  750

seq1  CACCATTAGTTGCTTCCTGGAACTGGAATAATTGTGGTGCTCAGGCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTAGTTGCTTCCTGGAACTGGAATAATTGTGGTGCTCAGGCAGCT  800

seq1  TGCTGAGTTCCCGATTTTGACTATTTTATACTGCAGCGGAAAAAAACAGT  850
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  TGCTGAGTTCCCGA-TTTGACTA-TTTATACTGCAGCGGAAAAAAACAGT  848

seq1  ATTCTGCTAGCCTGGAAAAATTACTGCAGGAAATGACTTCTGCCCTAAAG  900
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTAG-CTGGGAAAATTACTGCAGGAAATGACTTCTGCCCTAAAG  897

seq1  AGTA-TCTGATTCATTATAGCTTCCAGGATAAAGCAATCACTACAACTTT  949
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCTGATTCATTATAGCTTCCAGGATAAAGCAATCACTACAACTTT  947

seq1  -AAGTCTCT-GGAGGATTTAATCTACTTAAGCTAATGTAAA-CAAAGAGT  996
       |||||||| ||||| || |||||||||||||||||||||| ||| ||||
seq2  AAAGTCTCTGGGAGGTTTAAATCTACTTAAGCTAATGTAAACCAAGGAGT  997

seq1  AGTAGAAAG--AGCCTTTCATTCTAACGTGACTGT-GACTGGAATTGTC-  1042
      |||||||||   |||||||||||| |||||||||| |||| ||  |||| 
seq2  AGTAGAAAGGAGGCCTTTCATTCT-ACGTGACTGTGGACT-GATATGTCT  1045

seq1  TTTGGGGGT-AGGGACC  1058
      ||||||||| |||||||
seq2  TTTGGGGGTAAGGGACC  1062