BAC Information

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BAC

Clone NameB6Ng01-005K20
Chromosome14 (Build37)
Map Location 4,291,356 - 4,422,377
singlet/doubletdoublet
Overlap geneLOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119
Upstream geneLOC100040740, LOC100040755, LOC100040767, LOC100040779, LOC100038846, EG666890, LOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076
Downstream gene2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005K20.bB6Ng01-005K20.g
ACCDH842748DH842749
length1,1591,130
definitionDH842748|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K20, 5' end.DH842749|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,291,356 - 4,292,526)(4,421,236 - 4,422,377)
sequence
gaattcaccatgacctcctcattctgggtaattctccctgaaatgtggat
tatatagtttggccaaattcataggactaggccaaagatcaagagtcctt
gttctgaaagaaaaaaaaaaggagaaatgtcctcatagtttctgtatacc
cacacctgtgccataaactactgagagtttagagacctcgtctgtccctc
caggcctatgcgggagctcaaacaaccagaactctaaccacctggacacc
tagcctctggagacctttggacaagatagcaagattaataatcttagatg
atcctagtacataggaggtagaaggtaacatactgtgagcttggatagtt
cagaatccaccctggattcaggtgacccttgaagcctgtgttcttgggac
tctttgctcttggggccaggcccaaccacagatcaaatccttactatgaa
aaattgaaagtggagactaagcaggtaatgttggacctgcagagcttaca
gaatgtgtacactgaggcctcagagacatttgaattcctggcaaagagaa
aggctgctataggtaactgtctgtcttgcttgggagcacatgagctgtag
aattgccatctctgcttttgatcctgcacaggagactctcgagctctggt
tcttgctttctgccacttcacacaggagcctttagatttttctgttgtaa
acctgtggggttgaaacactttttggggtaaaaaaaaaaaaaggtcaaag
gaccctttcacagaggttgtgtatcagacaatcctttatctcagacactt
ctattatggcttataacagtacaaaaattatagtacccaagtagcaatga
aaatatcttaagtttggggaggtcactgcattaaagcatccacagcattt
ggtaaattgagaaacccttggtcttgacagaagactaatttgtatcatgt
ggaggtcttcttgacccctgggctgagtaagatctgtagagagctagtta
ccagcaaaccatatatagcaagtattcccttgtttctcctttcaattcat
agtgctttgcccattctttctgatgtctcataaggatgacaggtaaggac
actgaagtccacttcttcttttaggaaacatggaatcccttagggtggga
ctttggaag
gaattcagtgttcttcctgtgttagggcatggcccaagaagcaaataatg
tgctgaattgaggattcaataatcatgtgcaaacaggctgtatcatggac
tacccaaaccaattgcatgccaaatcctagttccttaaaactgggtcccc
ttggtgctaattaaacttactatcctgggcagagatcagcagagccaggg
gaccaaatggagctagctgatcttcaagagcttcctgggcaagcatgtag
gaatagactacttctatgacaattttctaatacactgtgccacaggcatg
ggtccaataggtatctgtaatgactttcctcttatttttaaggcagggat
tctcattccttggttcctgttgttatgtgaattcccagaggacacaacta
gtatttacaggagaaaggctttatcacacctcctcccccaggagattccc
atgtgacaccaaggaaacaccaggaagaaacttccctggtgatcactttg
gacctctatggactcacactaacaggacctgcaaactgtgcatcacacaa
atcctcagaccccatcaaaggtcccagagtctcagtcctgaacaaaacac
acacagctaagttcacacacatagacacaattagaatgccaaataaatcc
agggaggtgccatctctcagaatataatgaacaatatcagagtaaaacgt
gtgatagcctgcaggcattgcatacacacagagagacagtaagtgtgagc
aggtccttccagctgttgacagcaacaatcagattgcaagcaccccaagg
tcagtacataagaagatgataataaacacacagcactttgtttatccaac
aataaaacacctgtcagggctacttaattgaatgatgggagatgacacac
ttcattccagggaggaaattgggttaacagatggcacattaaaattcaca
gggtacttggcattaattcctacctgtagttcaattcctcatacatgtaa
acgttcagattccccacatttccctccaggcattgcggatcatctcaata
gcaatttcagttccctaacttattatattaatatccggattaagtgatgg
tggtaattttgggtggaagtattctgcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4291356_4292526
seq2: B6Ng01-005K20.b_45_1203

seq1  GAATTCACCATGACCTCCTCATTCTGGGTAATTCTCCCTGAAATGTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATGACCTCCTCATTCTGGGTAATTCTCCCTGAAATGTGGAT  50

seq1  TATATAGTTTGGCCAAATTCATAGGACTAGGCCAAAGATCAAGAGTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTTTGGCCAAATTCATAGGACTAGGCCAAAGATCAAGAGTCCTT  100

seq1  GTTCTGAAAGAAAAAAAAAAGGAGAAATGTCCTCATAGTTTCTGTATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAAAGAAAAAAAAAAGGAGAAATGTCCTCATAGTTTCTGTATACC  150

seq1  CACACCTGTGCCATAAACTACTGAGAGTTTAGAGACCTCGTCTGTCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGTGCCATAAACTACTGAGAGTTTAGAGACCTCGTCTGTCCCTC  200

seq1  CAGGCCTATGCGGGAGCTCAAACAACCAGAACTCTAACCACCTGGACACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTATGCGGGAGCTCAAACAACCAGAACTCTAACCACCTGGACACC  250

seq1  TAGCCTCTGGAGACCTTTGGACAAGATAGCAAGATTAATAATCTTAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCTGGAGACCTTTGGACAAGATAGCAAGATTAATAATCTTAGATG  300

seq1  ATCCTAGTACATAGGAGGTAGAAGGTAACATACTGTGAGCTTGGATAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGTACATAGGAGGTAGAAGGTAACATACTGTGAGCTTGGATAGTT  350

seq1  CAGAATCCACCCTGGATTCAGGTGACCCTTGAAGCCTGTGTTCTTGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCCACCCTGGATTCAGGTGACCCTTGAAGCCTGTGTTCTTGGGAC  400

seq1  TCTTTGCTCTTGGGGCCAGGCCCAACCACAGATCAAATCCTTACTATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTCTTGGGGCCAGGCCCAACCACAGATCAAATCCTTACTATGAA  450

seq1  AAATTGAAAGTGGAGACTAAGCAGGTAATGTTGGACCTGCAGAGCTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAAGTGGAGACTAAGCAGGTAATGTTGGACCTGCAGAGCTTACA  500

seq1  GAATGTGTACACTGAGGCCTCAGAGACATTTGAATTCCTGGCAAAGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGTACACTGAGGCCTCAGAGACATTTGAATTCCTGGCAAAGAGAA  550

seq1  AGGCTGCTATAGGTAACTGTCTGTCTTGCTTGGGAGCACATGAGCTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTATAGGTAACTGTCTGTCTTGCTTGGGAGCACATGAGCTGTAG  600

seq1  AATTGCCATCTCTGCTTTTGATCCTGCACAGGAGACTCTCGAGCTCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCATCTCTGCTTTTGATCCTGCACAGGAGACTCTCGAGCTCTGGT  650

seq1  TCTTGCTTTCTGCCACTTCACACAGGAGCCTTTAGATTTTTCTGTTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTCTGCCACTTCACACAGGAGCCTTTAGATTTTTCTGTTGTAA  700

seq1  ACCTGT-GGGTTGAAACACTTTTTGGGGT-AAAAAAAAAAAAGGTCAAAG  748
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  ACCTGTGGGGTTGAAACACTTTTTGGGGTAAAAAAAAAAAAAGGTCAAAG  750

seq1  GACCCTTTCACAGAGGTTGTGTATCAGACAATCCTTTATCTCAGACACTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTTCACAGAGGTTGTGTATCAGACAATCCTTTATCTCAGACACTT  800

seq1  CTATTATGGCTTATAACAGTACAAAAATTATAGTACCCAAGTAGCAATGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATGGCTTATAACAGTACAAAAATTATAGTACCCAAGTAGCAATGA  850

seq1  AAATAATCTTAAGTTT-GGGAGGTCACTGCATTAAAGCATCCACAGCATT  897
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAT-ATCTTAAGTTTGGGGAGGTCACTGCATTAAAGCATCCACAGCATT  899

seq1  TGGTAAATTGAGAAACCC-TGGTCTTGACAGAAGAACTATTTGTATCATG  946
      |||||||||||||||||| ||||||||||||||||   ||||||||||||
seq2  TGGTAAATTGAGAAACCCTTGGTCTTGACAGAAGACTAATTTGTATCATG  949

seq1  T-GAGGTCTTCTTGACCCCCGGGGCTGAGTCAGGATCTGTAGAGAGCTAG  995
      | ||||||||||||| |||| ||||||||| | |||||||||||||||||
seq2  TGGAGGTCTTCTTGA-CCCCTGGGCTGAGT-AAGATCTGTAGAGAGCTAG  997

seq1  TTACCAGCAGACCCATATATAGCAAGTATTCCCCTTGTTTCTCCTTTCCA  1045
      ||||||||| | |||||||||||||||||| |||||||||||||||| ||
seq2  TTACCAGCA-AACCATATATAGCAAGTATT-CCCTTGTTTCTCCTTT-CA  1044

seq1  ATTCATAGTGCCTTTGCCCATTCCTTCGTGATGTTTCTCCATTAGGATGG  1095
      |||||||||| |||||||||||| ||| |||||| |   ||| ||||| |
seq2  ATTCATAGTG-CTTTGCCCATTCTTTC-TGATGTCT---CATAAGGAT-G  1088

seq1  ACAGGTAGGGACAACTGTAGTCCACTTCTTCTTTTTAGGAAACATGGATC  1145
      ||||||| |||| |||| ||||||||||||| ||||||||||||||||  
seq2  ACAGGTAAGGAC-ACTGAAGTCCACTTCTTC-TTTTAGGAAACATGGAAT  1136

seq1  CCTCTTAGTGTTGGGACTTTTGGAAG  1171
      || ||||| | |||||| ||||||||
seq2  CC-CTTAG-GGTGGGAC-TTTGGAAG  1159

seq1: chr14_4421236_4422377
seq2: B6Ng01-005K20.g_73_1202 (reverse)

seq1  TCTGCAGGGTCTGCTAGAAATACTTCAACCCAAAATTA-CAACATCAC-T  48
               ||||| || |||||||| ||||||||||| || |||||| |
seq2  ---------TCTGC-AG-AATACTTCCACCCAAAATTACCACCATCACTT  39

seq1  AAT-CAGATATTAAATATAAATAAAGTTAGAGAACTGAAATTGCATATGA  97
      ||| | |||||| |||||||   ||||||| ||||||||||||| |||  
seq2  AATCCGGATATT-AATATAA--TAAGTTAGGGAACTGAAATTGC-TATTG  85

seq1  GGATGATCAGCAATGACATGGA-GGAAATGTGTGGAATCCTGAACGTTTA  146
       ||||||| |||||| | |||| ||||||||| ||||| |||||||||||
seq2  AGATGATCCGCAATG-CCTGGAGGGAAATGTGGGGAAT-CTGAACGTTTA  133

seq1  CATGTATGAGGATTTGAACTACAGGTAGGAATT-ATGCCCAGTACCCTGT  195
      |||||||||||| |||||||||||||||||||| ||||| ||||||||||
seq2  CATGTATGAGGAATTGAACTACAGGTAGGAATTAATGCCAAGTACCCTGT  183

seq1  TGAATGTATTGTGCCATCTGTTAACCCAATTTCCTTCCATGAATGGAGTG  245
        | | || |||||||||||||||||||||||||| ||  ||||| ||||
seq2  GAATTTTAATGTGCCATCTGTTAACCCAATTTCCTCCCTGGAATGAAGTG  233

seq1  TGTCATCTCCCATCATTCAATTAAGTAGCCCTGACAGGTGTTTAATTGTT  295
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTCATCTCCCATCATTCAATTAAGTAGCCCTGACAGGTGTTTTATTGTT  283

seq1  GGATAAACAAAGTGCTGTGTGTTTATTATCATCTTCTTATGTACTTGACC  345
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGATAAACAAAGTGCTGTGTGTTTATTATCATCTTCTTATGTAC-TGACC  332

seq1  TTGGGGTGCTTGCAATCTGATTGTTGCTGTCAACAGCTGGAAGGACCTGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTGCTTGCAATCTGATTGTTGCTGTCAACAGCTGGAAGGACCTGC  382

seq1  TCACACTTACTGTCTCTCTGTGTGTATGCAATGCCTGCAGGCTATCACAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTACTGTCTCTCTGTGTGTATGCAATGCCTGCAGGCTATCACAC  432

seq1  G-TTTACTCTGATATTGTTCATTATATTCTGAGAGATGGCACCTCCCTGG  494
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTCTGATATTGTTCATTATATTCTGAGAGATGGCACCTCCCTGG  482

seq1  ATTTATTTGGCATTCTAATTGTGTCTATGTGTGTGAACTTAGCTGTGTGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGGCATTCTAATTGTGTCTATGTGTGTGAACTTAGCTGTGTGT  532

seq1  GTTTTGTTCAGGACTGAGACTCTGGGACCTTTGATGGGGTCTGAGGATTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTCAGGACTGAGACTCTGGGACCTTTGATGGGGTCTGAGGATTT  582

seq1  GTGTGATGCACAGTTTGCAGGTCCTGTTAGTGTGAGTCCATAGAGGTCCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGCACAGTTTGCAGGTCCTGTTAGTGTGAGTCCATAGAGGTCCA  632

seq1  AAGTGATCACCAGGGAAGTTTCTTCCTGGTGTTTCCTTGGTGTCACATGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATCACCAGGGAAGTTTCTTCCTGGTGTTTCCTTGGTGTCACATGG  682

seq1  GAATCTCCTGGGGGAGGAGGTGTGATAAAGCCTTTCTCCTGTAAATACTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCCTGGGGGAGGAGGTGTGATAAAGCCTTTCTCCTGTAAATACTA  732

seq1  GTTGTGTCCTCTGGGAATTCACATAACAACAGGAACCAAGGAATGAGAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTCCTCTGGGAATTCACATAACAACAGGAACCAAGGAATGAGAAT  782

seq1  CCCTGCCTTAAAAATAAGAGGAAAGTCATTACAGATACCTATTGGACCCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTTAAAAATAAGAGGAAAGTCATTACAGATACCTATTGGACCCA  832

seq1  TGCCTGTGGCACAGTGTATTAGAAAATTGTCATAGAAGTAGTCTATTCCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGGCACAGTGTATTAGAAAATTGTCATAGAAGTAGTCTATTCCT  882

seq1  ACATGCTTGCCCAGGAAGCTCTTGAAGATCAGCTAGCTCCATTTGGTCCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTTGCCCAGGAAGCTCTTGAAGATCAGCTAGCTCCATTTGGTCCC  932

seq1  CTGGCTCTGCTGATCTCTGCCCAGGATAGTAAGTTTAATTAGCACCAAGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTGCTGATCTCTGCCCAGGATAGTAAGTTTAATTAGCACCAAGG  982

seq1  GGACCCAGTTTTAAGGAACTAGGATTTGGCATGCAATTGGTTTGGGTAGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAGTTTTAAGGAACTAGGATTTGGCATGCAATTGGTTTGGGTAGT  1032

seq1  CCATGATACAGCCTGTTTGCACATGATTATTGAATCCTCAATTCAGCACA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATACAGCCTGTTTGCACATGATTATTGAATCCTCAATTCAGCACA  1082

seq1  TTATTTGCTTCTTGGGCCATGCCCTAACACAGGATGAACACTGAATTC  1142
      |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTATTTGCTTCTTGGGCCATGCCCTAACACAGGAAGAACACTGAATTC  1130