BAC Information

Click to search

BAC

Clone NameB6Ng01-005O22
Chromosome14 (Build37)
Map Location 119,622,333 - 119,623,317
singlet/doubletsinglet
Overlap geneHs6st3
Upstream geneSox21, LOC100043825, EG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2
Downstream geneLOC619601, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005O22.bB6Ng01-005O22.g
ACCDH842933DH842934
length767983
definitionDH842933|Mus musculus domesticus DNA, BAC clone: B6Ng01-005O22, 5' end.DH842934|Mus musculus domesticus DNA, BAC clone: B6Ng01-005O22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctttaaattatagggcacagatctaaacaaagaactctccaaag
aggaaatttaactggctgagaaacacttttaaaattgttcaccatcctta
gtcatcagggaaatgacaatccaactaccttgagattatcatcttacatc
catcagaatggctaaaatcaataaagcaagtagcaggtcatgctggtgag
gttgtggagcaaggggaacatatttcctttactgatgggggtggaaactt
gtacaaccactatggcaattagtgtggcggttcctcacaaagttgggaat
agatctaagtcaagattcagctatgcctctcttgggcatatataaaaatt
attattcttcctacttcagagacacttgcttagccatgttcagtgctgct
caattcataatagcccaaaatagcaaacaacttgaatgtcctcaacaaaa
gaatggataaagaaaatgtggtacatttatatgacatcatgaaattcaca
ggtaagcagatggaattagaaaaaaagtcatcctgtttgaggtaacccag
aaccagaaaggaaagtatgttatgtattgacttacatatagatctaactg
tcaagtcaatgatgaccaagccacaacacctaagacaacagaggttaggt
ttagagtaagggacagtttgggagagtttatctccttaggaaggagaaat
agaataatttaggaatgaataagcagggggttgaaattgagaggattgag
tgtattaggaggagggt
gaattctgtaactcccctccctctctcagtcctcacttccctgttttgtc
ttttccctccttctttctctttctcttccttcctgtctttctcctgtctc
ctcttaaaatttctgtattagttcacttggaatttaaaccttggctttta
gatattaaatatattttctacttttcctagagtttctaatagttggcttg
atgcttggtgatgcaaaagatatatcccttcttcaccacttcatcctgtt
aaaaatacagctttatgcaatggaatctattctcatcttgggaacattat
ttttgggtctgcacacctgctctcctggaatgtttttttttttttttttt
tttatggctgctgagttagtttcttggatccttatactccattttggggg
taatgctttgtgtgattgttttaaaagacagtggcctgtctctctatttc
tgtatctttattttgctattgtatttagtatgaaattgaaatttaaggtt
tgggtgggtaaaaatataatgccttcaagtgttttttttttttgaaggat
ccgtacaccacccatatcagctgatgccggtttataagccgtatgatatt
gtcagattctcttattttgaaacaggttttctccttttttttttttttac
atatattaaaacactacgattgtgtctcattccctcgagtttcaagatct
gaaactttttatcctttctagtcggctaaaaggttgcattttatactatt
tattttacatttgtagtcctttaaagggggtgtgtgccctctcgggtgtg
gtgagtaccaaatactttccacttcctttgggaaataagcttaaataccc
tcccctcggctatgccttgctttattttatttatttttattttaagaaaa
ttaggggattttttttcccacttcatgttcagagatgatcatgtactatg
aaaaactttgacagagaggactgtcagtgataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_119622333_119623317
seq2: B6Ng01-005O22.g_69_1051

seq1  GAATTCTGTAACTCCCCTCCCTCTCTCAGTCCTCACTTCCCTGTTTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAACTCCCCTCCCTCTCTCAGTCCTCACTTCCCTGTTTTGTC  50

seq1  TTTTCCCTCCTTCTTTCTCTTTCTCTTCCTTCCTGTCTTTCTCCTGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTCCTTCTTTCTCTTTCTCTTCCTTCCTGTCTTTCTCCTGTCTC  100

seq1  CTCTTAAAATTTCTGTATTAGTTCACTTGGAATTTAAACCTTGGCTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAAATTTCTGTATTAGTTCACTTGGAATTTAAACCTTGGCTTTTA  150

seq1  GATATTAAATATATTTTCTACTTTTCCTAGAGTTTCTAATAGTTGGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAAATATATTTTCTACTTTTCCTAGAGTTTCTAATAGTTGGCTTG  200

seq1  ATGCTTGGTGATGCAAAAGATATATCCCTTCTTCACCACTTCATCCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGGTGATGCAAAAGATATATCCCTTCTTCACCACTTCATCCTGTT  250

seq1  AAAAATACAGCTTTATGCAATGGAATCTATTCTCATCTTGGGAACATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACAGCTTTATGCAATGGAATCTATTCTCATCTTGGGAACATTAT  300

seq1  TTTTGGGTCTGCACACCTGCTCTCCTGGAATGTTTTTTTTTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTCTGCACACCTGCTCTCCTGGAATGTTTTTTTTTTTTTTTTTT  350

seq1  TTTATGGCTGCTGAGTTAGTTTCTTGGATCCTTATACTCCATTTTGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGCTGCTGAGTTAGTTTCTTGGATCCTTATACTCCATTTTGGGGG  400

seq1  TAATGCTTTGTGTGATTGTTTTAAAAGACAGTGGCCTGTCTCTCTATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTTTGTGTGATTGTTTTAAAAGACAGTGGCCTGTCTCTCTATTTC  450

seq1  TGTATCTTTATTTTGCTATTGTATTTAGTATGAAATTGAAATTTAAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTTATTTTGCTATTGTATTTAGTATGAAATTGAAATTTAAGGTT  500

seq1  TGGGTGGGTAAAAATATAATGCCTTCAAGTGTTTTTTTTTTTTGAAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGTAAAAATATAATGCCTTCAAGTGTTTTTTTTTTTTGAAGGAT  550

seq1  CCGTACACCACCCATATCAGCTGATGCCGGTTTATAAGCCGTATGATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTACACCACCCATATCAGCTGATGCCGGTTTATAAGCCGTATGATATT  600

seq1  GTCAGATTCTCTTATTTTGAAACAGGTTTTCTCCTTTTTTTTTTTTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATTCTCTTATTTTGAAACAGGTTTTCTCCTTTTTTTTTTTTTTAC  650

seq1  ATATATTAAAACACTACGATTTTGTTCTCATTCCCTTGAGTTTCAGGATC  700
      ||||||||||||||||||||| || ||||||||||| |||||||| ||||
seq2  ATATATTAAAACACTACGATTGTG-TCTCATTCCCTCGAGTTTCAAGATC  699

seq1  TGAAAC-TTTTATCCTTTCTAGTCGGCTAAAAGTTTGCATTTTA-ATTAT  748
      |||||| |||||||||||||||||||||||||| |||||||||| | |||
seq2  TGAAACTTTTTATCCTTTCTAGTCGGCTAAAAGGTTGCATTTTATACTAT  749

seq1  TTATTTTACATTTCTAGT-CTTTTAAGTGGGTGTAGTGCCCTCTCGGTTG  797
      ||||||||||||| |||| |||| ||| |||||| |||||||||||| ||
seq2  TTATTTTACATTTGTAGTCCTTTAAAGGGGGTGT-GTGCCCTCTCGGGTG  798

seq1  T-GTGGGTACCAAATAC-TTCCCCTTCCTTT-GGAGTTAGTTTTGAATTC  844
      | ||| ||||||||||| |||| |||||||| |||  ||   || ||| |
seq2  TGGTGAGTACCAAATACTTTCCACTTCCTTTGGGAAATAAGCTTAAATAC  848

seq1  CCTCCCATCGTCTATG-CTTGCTTTATTTTATTTTATTTTTTATTTTTAG  893
      |||||| ||| ||||| |||||||||||||||||   |||||||||| ||
seq2  CCTCCCCTCGGCTATGCCTTGCTTTATTTTATTT--ATTTTTATTTTAAG  896

seq1  ATAATTTGGTGATTTTTTTTCCCATTTTCATGTTCAGAGTAAGGATCATG  943
      | |||| || ||||||||||||||  |||||||||||||  | |||||||
seq2  AAAATTAGGGGATTTTTTTTCCCA-CTTCATGTTCAGAG--ATGATCATG  943

seq1  TACT-TGAAAAACTTTGACAAGAGGAGGACTGTCAAGTGATAA  985
      |||| |||||||||||||| ||| |||||||||| ||||||||
seq2  TACTATGAAAAACTTTGAC-AGA-GAGGACTGTC-AGTGATAA  983