BAC Information

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BAC

Clone NameB6Ng01-005P13
Chromosome14 (Build37)
Map Location 30,366,081 - 30,496,497
singlet/doubletdoublet
Overlap geneCacna2d3
Upstream geneLrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005P13.bB6Ng01-005P13.g
ACCDH842957DH842958
length1,129909
definitionDH842957|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P13, 5' end.DH842958|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,495,364 - 30,496,497)(30,366,081 - 30,366,991)
sequence
gaattctggcactaagactgccccagtgggccctaaaagtcagggtggct
aggaccctggtattggtacttagtgaaggcattggtgaaaaccgcagctt
cagaacggatgctggaaggtagatagatcaactttgtttttctcgttcac
tgcctgttattaggatcatcataggcatttcccggttcactgtcaaatct
aaggaaattaagttcattacgtttttgtcatgcatgaaccataattctcg
agggctctttaagtttcctgtccagttactaatcttaattttttttttct
gaagacagtcactagcccgttttataatcagcatttcccttcatttaggc
ttttgggaattttatgctatatttttccccactgagatcagtgttttgtg
ccaaagaaataagaaattaaacggtctgaagtaatgagatggagcgaggc
cattttgccagaggaggagtgtggtcagaggttgctccaatgggctgtgt
gtggatagcactgcacttggggagttgctgtggagaatgccactggaaaa
ggaggttggcatataggggacacctgctggaggatgggctctctgtcctt
aggatgtcagcaagcacataaagaatggcttcatgcagcatgaaggctac
tcccttcaggcacatatatcagtctgggattctcagctctgcatggattt
ctaaccagcaatggcgccagctttcctgtaccgttgtagctctttcatac
cgaatacagaattttgtacctctctgccagatcctgaccaggcttgtggc
cacatgaagacttcctcctgggaaaaggaagatagcaagatacaaatggc
atgtgaatgccatccgtcctcatgatgaggttaaaggcatgtactatctt
actttgctgatcactccaagtcgtatacatggaaacacatgtcattgttc
tccttgattggagctcatatgatccaggggccaggaatcttgagtctctt
aagccttagagtatctccctttacttctgtggtgagaactagccactgga
gtctgggtactgggtgacattgacgtttagagggattaatgtacaattca
gcccaaggacttagaaagtccttcacatt
gaattcatgacacgttttgttttgttttaattcattctgtgagtaccatt
ttcaaactggaaaaagtatagtctgagagaggcatggggagagagataga
aggtacggaatggccttaaatggaggcacactggctcagggacccatctt
gacctctactaagaatattccaaaaatctctgtataaacaaaccatgctc
gctgtagggaaagtgagtagatgctaaacataagcaagtagaggaggaag
acatagaaaggctttattcctctttcctaaaccttatctcttagtgtaga
tcactataaaatgttggtttttaaatataattatttttatatgttgataa
ggactgtattcaaattgtttcctaaagatttaagaaacaaaaaccttcac
cctccaaaatgaagatggagagtgtttgaggtccaaccatccaagacttc
tcaccccaaataactgtgaccctaggggtgggaatgggcaaggccatgca
gtgtagcttcttagggaagaaggaaaggactttaaaagtagctgttctgc
cagatagtgcctattccagcaggggccctccggagtatctggtgacatgt
tgggtttccagtactggggactgacacttgtcaatgtagggatagaggtc
acagaagccacggaacagtctccatgatgcaggaaagttacttgcagcac
agaatcacctcttcaaataaagcaaggatgcagggttggcagtgaaccca
ggatagagaatgaatttccataaaggagtgccaagaacacaaatcctaaa
gactctcaggcagctatgtacctctacaacccaaagttctgccccaaagc
ccctcgatcatgaagtgagcccgagttcttgcaggaaagggttgggggtt
tgttgttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30495364_30496497
seq2: B6Ng01-005P13.b_44_1172 (reverse)

seq1  AATGTTGGAAGGACTTTCTAAGGTCCTTGGGCTGGAATTTTGTCTCATTT  50
      |||||  |||||||||||||| |||||||||||| |   ||||  || ||
seq2  AATGT--GAAGGACTTTCTAA-GTCCTTGGGCTGAA---TTGT-ACA-TT  42

seq1  ATTCCCTCTTAAACGTCAATGTCA-CCAGTACCCAGACT-CAGTGGCTAG  98
      | |||||| ||||||||||||||| |||||||||||||| ||||||||||
seq2  AATCCCTC-TAAACGTCAATGTCACCCAGTACCCAGACTCCAGTGGCTAG  91

seq1  TTCTCA-CACAGAAGTAAAGGGAGATTAACTCTAAGGCTTAAGAGACTCA  147
      |||||| |||||||||||||||||||  ||||||||||||||||||||||
seq2  TTCTCACCACAGAAGTAAAGGGAGAT--ACTCTAAGGCTTAAGAGACTCA  139

seq1  AGATTCCTGGCCCCTGGATCATATGAGCTCCACTCAA-GAGAAC-ATGAC  195
      |||||||||||||||||||||||||||||||| |||| |||||| |||||
seq2  AGATTCCTGGCCCCTGGATCATATGAGCTCCAATCAAGGAGAACAATGAC  189

seq1  ATGTGTTTCCATGTATACGACTTGGAGTGATCAGCAAAGTAAGATAGTAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTCCATGTATACGACTTGGAGTGATCAGCAAAGTAAGATAGTAC  239

seq1  ATGCCTTTAACCTCATCATGAGGACGGATGGCATTCACATGCCATTTGTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTAACCTCATCATGAGGACGGATGGCATTCACATGCCATTTGTA  289

seq1  TCCTGCTATCTTCCTTTTCCCAGGAGGCAGTCTTCATGTGGCCACAAGCC  345
      || |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTTGCTATCTTCCTTTTCCCAGGAGGAAGTCTTCATGTGGCCACAAGCC  339

seq1  TGGTCAGGATCTGGCAGAGAGGTACAAAATTCTGTATTCGGTATGAAAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGATCTGGCAGAGAGGTACAAAATTCTGTATTCGGTATGAAAGA  389

seq1  GCTACAACGGTACAGG-AAGCTGGCGCCATTGCTGGTTAGAAATCCATGC  444
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCTACAACGGTACAGGAAAGCTGGCGCCATTGCTGGTTAGAAATCCATGC  439

seq1  AGAGCTGAGAATCCCAGACTGATATATGTGCCTGAAGGGAGTAGCCTTCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGAGAATCCCAGACTGATATATGTGCCTGAAGGGAGTAGCCTTCA  489

seq1  TGCTGCATGAAGCCATTCTTTATGTGCTTGCTGACATCCTAAGGACAGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCATGAAGCCATTCTTTATGTGCTTGCTGACATCCTAAGGACAGAG  539

seq1  AGCCCATCCTCCAGCAGGTGTCCCCTATATGCCAACCTCCTTTTCCAGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCCTCCAGCAGGTGTCCCCTATATGCCAACCTCCTTTTCCAGTG  589

seq1  GCATTCTCCACAGCAACTCCCCAAGTGCAGTGCTATCCACACACAGCCCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCCACAGCAACTCCCCAAGTGCAGTGCTATCCACACACAGCCCA  639

seq1  TTGGAGCAACCTCTGACCACACTCCTCCTCTGGCAAAATGGCCTCGCTCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCAACCTCTGACCACACTCCTCCTCTGGCAAAATGGCCTCGCTCC  689

seq1  ATCTCATTACTTCAGACCGTTTAATTTCTTATTTCTTTGGCACAAAACAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTACTTCAGACCGTTTAATTTCTTATTTCTTTGGCACAAAACAC  739

seq1  TGATCTCAGTGGGGAAAAATATAGCATAAAATTCCCAAAAGCCTAAATGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCAGTGGGGAAAAATATAGCATAAAATTCCCAAAAGCCTAAATGA  789

seq1  AGGGAAATGCTGATTATAAAACGGGCTAGTGACTGTCTTCAGAAAAAAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATGCTGATTATAAAACGGGCTAGTGACTGTCTTCAGAAAAAAAA  839

seq1  AATTAAGATTAGTAACTGGACAGGAAACTTAAAGAGCCCTCGAGAATTAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGATTAGTAACTGGACAGGAAACTTAAAGAGCCCTCGAGAATTAT  889

seq1  GGTTCATGCATGACAAAAACGTAATGAACTTAATTTCCTTAGATTTGACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGCATGACAAAAACGTAATGAACTTAATTTCCTTAGATTTGACA  939

seq1  GTGAACCGGGAAATGCCTATGATGATCCTAATAACAGGCAGTGAACGAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCGGGAAATGCCTATGATGATCCTAATAACAGGCAGTGAACGAGA  989

seq1  AAAACAAAGTTGATCTATCTACCTTCCAGCATCCGTTCTGAAGCTGCGGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGTTGATCTATCTACCTTCCAGCATCCGTTCTGAAGCTGCGGT  1039

seq1  TTTCACCAATGCCTTCACTAAGTACCAATACCAGGGTCCTAGCCACCCTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCAATGCCTTCACTAAGTACCAATACCAGGGTCCTAGCCACCCTG  1089

seq1  ACTTTTAGGGCCCACTGGGGCAGTCTTAGTGCCAGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGGGCCCACTGGGGCAGTCTTAGTGCCAGAATTC  1129

seq1: chr14_30366081_30366991
seq2: B6Ng01-005P13.g_69_977

seq1  GAATTCATGACACGTTTTGTTTTGTTTTAATTCATTCTGTGAGTACCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACACGTTTTGTTTTGTTTTAATTCATTCTGTGAGTACCATT  50

seq1  TTCAAACTGGAAAAAGTATAGTCTGAGAGAGGCATGGGGAGAGAGATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTGGAAAAAGTATAGTCTGAGAGAGGCATGGGGAGAGAGATAGA  100

seq1  AGGTACGGAATGGCCTTAAATGGAGGCACACTGGCTCAGGGACCCATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACGGAATGGCCTTAAATGGAGGCACACTGGCTCAGGGACCCATCTT  150

seq1  GACCTCTACTAAGAATATTCCAAAAATCTCTGTATAAACAAACCATGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTACTAAGAATATTCCAAAAATCTCTGTATAAACAAACCATGCTC  200

seq1  GCTGTAGGGAAAGTGAGTAGATGCTAAACATAAGCAAGTAGAGGAGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGGGAAAGTGAGTAGATGCTAAACATAAGCAAGTAGAGGAGGAAG  250

seq1  ACATAGAAAGGCTTTATTCCTCTTTCCTAAACCTTATCTCTTAGTGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAAAGGCTTTATTCCTCTTTCCTAAACCTTATCTCTTAGTGTAGA  300

seq1  TCACTATAAAATGTTGGTTTTTAAATATAATTATTTTTATATGTTGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATAAAATGTTGGTTTTTAAATATAATTATTTTTATATGTTGATAA  350

seq1  GGACTGTATTCAAATTGTTTCCTAAAGATTTAAGAAACAAAAACCTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTATTCAAATTGTTTCCTAAAGATTTAAGAAACAAAAACCTTCAC  400

seq1  CCTCCAAAATGAAGATGGAGAGTGTTTGAGGTCCAACCATCCAAGACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAAATGAAGATGGAGAGTGTTTGAGGTCCAACCATCCAAGACTTC  450

seq1  TCACCCCAAATAACTGTGACCCTAGGGGTGGGAATGGGCAAGGCCATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCAAATAACTGTGACCCTAGGGGTGGGAATGGGCAAGGCCATGCA  500

seq1  GTGTAGCTTCTTAGGGAAGAAGGAAAGGACTTTAAAAGTAGCTGTTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTTCTTAGGGAAGAAGGAAAGGACTTTAAAAGTAGCTGTTCTGC  550

seq1  CAGATAGTGCCTATTCCAGCAGGGGCCCTCCGGAGTATCTGGTGACATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGTGCCTATTCCAGCAGGGGCCCTCCGGAGTATCTGGTGACATGT  600

seq1  TGGGTTTCCAGTACTGGGGACTGACACTTGTCAATGTAGGGATAGAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCCAGTACTGGGGACTGACACTTGTCAATGTAGGGATAGAGGTC  650

seq1  ACAGAAGCCACGGAACAGTCTCCATGATGCAGGAAAGTTACTTGCAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCCACGGAACAGTCTCCATGATGCAGGAAAGTTACTTGCAGCAC  700

seq1  AGAATCACCTCTTCAAATAAAGCAAGGATGCAGGGTTGGCAGTGAACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCACCTCTTCAAATAAAGCAAGGATGCAGGGTTGGCAGTGAACCCA  750

seq1  GGATAGAGAATGAATTTCCAT-AAGGAGTGCCAAGAACACAAATCCTAAA  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGATAGAGAATGAATTTCCATAAAGGAGTGCCAAGAACACAAATCCTAAA  800

seq1  GACTCTCAGGGCAGCTATGTACCTCTACAACCCAAAGTTCTGCCCCAAAG  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCA-GGCAGCTATGTACCTCTACAACCCAAAGTTCTGCCCCAAAG  849

seq1  CCCCTCGATCATGAAGTGAGCCCCGAGTTCTTGCAGGGAAAGGGTTGGGG  899
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  CCCCTCGATCATGAAGTGAG-CCCGAGTTCTTGCA-GGAAAGGGTTGGGG  897

seq1  GTTTGTTGTTGT  911
      ||||||||||||
seq2  GTTTGTTGTTGT  909