BAC Information

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BAC

Clone NameB6Ng01-006B09
Chromosome14 (Build37)
Map Location 42,713,811 - 42,714,461
singlet/doubletsinglet
Overlap geneLOC666233, EG385234
Upstream geneTspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC100041930, EG666152
Downstream geneLOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006B09.bB6Ng01-006B09.g
ACCDH843043DH843044
length6511,199
definitionDH843043|Mus musculus domesticus DNA, BAC clone: B6Ng01-006B09, 5' end.DH843044|Mus musculus domesticus DNA, BAC clone: B6Ng01-006B09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagcactggatcatggtcagttgagccaggagcactggctatgg
ggtccaggaaggtgctgggcaagggcggctggtggccaaactaaagttaa
gagttgagtttccctagataaaaccggggaccctgctagacagcacagaa
aaaagcttcctagcaaccaagattttctgaagagcttttgctctgcctgc
ccgaaggggtccaagggcattgggtgtctttcttgggacaaaaccagaca
gccccagaaatgtccctccagcccttacttaacttttcctgtccgtgggg
ggatttttgagagacagagtgagatagttatccagcttgcagataattag
aaggaaactttaagggtggagcataatgtaaataaagtttaagaaaatgc
agaaatgtgcaagaatgtgtttgccaatcacacccacagtggtgactttt
ttatataggtgtaaaatggcttctgctagtcttagaagttctgaagttta
gactctgatgcctagtgttaaacattgtttgagaaatatctctcaaggct
gggtactgggaacactgaaccagggagatccagagttcaagaccctcctg
agctacaaaagaccctctctgagaaaagaaagggagggggagtgggtggt
a
gaattcaagacactacaatttgaggagtatggaatattacacataagtga
gctcaaaaaaatccaggagagaactcctacagctgataaaccacttcagc
aaagtcaatggatacaaaattaactcaaacaatccaggaactttcctcta
ctcaaaggataattatcctgaggaagagattttttaaaactacatacttc
acaatagtcacaaacaatatcttggtgtgcctcgaacaaagcaagggaaa
gataataatgaatgacaagaacattaagtctctgaacaaagaaaacaaag
aagaccttagaagatggaaagatctcccatggtcattgatgagcaggatt
aatatagtaaaaaaggtccatcttgccagaagcaatctacggattcaatg
caatccccatcacaattccaactcattccttcacagagatagaaaaagca
attctcaaatttatctgaaataacataaacccagtatagcaaaaactatt
cctaacaataaaagaatggttcaggaaatcaccatccctgatctcaaaat
ataccacagggcaagtgataaaaatgtcatgtttctggtatagagagaca
agtagaccaacagaatagaattgaagacctagaaatgaacctacattcat
atggtcacttgatctttgtcaaaggagccaaaaccatccagtggataaaa
gacagcattttcaacaattggtgcttgttcaactggcagtctgcatatag
aagaatgcaaattgatgtattcttatctccttgtacaaagctctagtcca
agtcactcaaggacctccacggaaaacaagatacattgaatctaatacaa
gagagagcagtaaagaacctcaacacattgtcacaggggaaatgttcctg
tacaggacaccaatggctcatgctgtaggaccaaaacagtgtcaaatggg
accccataaattgaaagcttgtagtcaaagatgctgtcaaagacaaatgc
acacacatatagggaaacttctgtacactctacatctgatagaggctata
tcaaatataaaagaacctcaggagttacacctcgagatctaataacccta
taaagaatgggttaagagcttaacagaattctcaacggaggactgatgct
gaagtactcagagttcaactcttagtctcagaatcagtctaatgatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42713811_42714461
seq2: B6Ng01-006B09.b_43_693

seq1  GAATTCCAGCACTGGATCATGGTCAGTTGAGCCAGGAGCACTGGCTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACTGGATCATGGTCAGTTGAGCCAGGAGCACTGGCTATGG  50

seq1  GGTCCAGGAAGGTGCTGGGCAAGGGCGGCTGGTGGCCAAACTAAAGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGGAAGGTGCTGGGCAAGGGCGGCTGGTGGCCAAACTAAAGTTAA  100

seq1  GAGTTGAGTTTCCCTAGATAAAACCGGGGACCCTGCTAGACAGCACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAGTTTCCCTAGATAAAACCGGGGACCCTGCTAGACAGCACAGAA  150

seq1  AAAAGCTTCCTAGCAACCAAGATTTTCTGAAGAGCTTTTGCTCTGCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTCCTAGCAACCAAGATTTTCTGAAGAGCTTTTGCTCTGCCTGC  200

seq1  CCGAAGGGGTCCAAGGGCATTGGGTGTCTTTCTTGGGACAAAACCAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGGGGTCCAAGGGCATTGGGTGTCTTTCTTGGGACAAAACCAGACA  250

seq1  GCCCCAGAAATGTCCCTCCAGCCCTTACTTAACTTTTCCTGTCCGTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGAAATGTCCCTCCAGCCCTTACTTAACTTTTCCTGTCCGTGGGG  300

seq1  GGATTTTTGAGAGACAGAGTGAGATAGTTATCCAGCTTGCAGATAATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTGAGAGACAGAGTGAGATAGTTATCCAGCTTGCAGATAATTAG  350

seq1  AAGGAAACTTTAAGGGTGGAGCATAATGTAAATAAAGTTTAAGAAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACTTTAAGGGTGGAGCATAATGTAAATAAAGTTTAAGAAAATGC  400

seq1  AGAAATGTGCAAGAATGTGTTTGCCAATCACACCCACAGTGGTGACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTGCAAGAATGTGTTTGCCAATCACACCCACAGTGGTGACTTTT  450

seq1  TTATATAGGTGTAAAATGGCTTCTGCTAGTCTTAGAAGTTCTGAAGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGGTGTAAAATGGCTTCTGCTAGTCTTAGAAGTTCTGAAGTTTA  500

seq1  GACTCTGATGCCTAGTGTTAAACATTGTTTGAGAAATATCTCTCAAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGATGCCTAGTGTTAAACATTGTTTGAGAAATATCTCTCAAGGCT  550

seq1  GGGTACTGGGAACACTGAACCAGGGAGATCCAGAGTTCAAGACCCTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTGGGAACACTGAACCAGGGAGATCCAGAGTTCAAGACCCTCCTG  600

seq1  AGCTACAAAAGACCCTCTCTGAGAAAAGAAAGGGAGGGGGAGTGGGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAAAAGACCCTCTCTGAGAAAAGAAAGGGAGGGGGAGTGGGTGGT  650

seq1  A  651
      |
seq2  A  651