BAC Information

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BAC

Clone NameB6Ng01-006B15
Chromosome14 (Build37)
Map Location 53,600,673 - 53,601,816
singlet/doubletsinglet
Overlap genenone
Upstream geneE130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202
Downstream geneLOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006B15.bB6Ng01-006B15.g
ACCDH843055DH843056
length1,2351,116
definitionDH843055|Mus musculus domesticus DNA, BAC clone: B6Ng01-006B15, 5' end.DH843056|Mus musculus domesticus DNA, BAC clone: B6Ng01-006B15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtctc
ctatccgatttgggacaggtaaagattctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagcacaagccattgctgtt
ctattcagaaatttttcccctgtacccatatcttcgagactttcccctac
tttctcctctataagtttcagtgtccctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
attcttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccacgaatggcagagaagcacctgaaaaaatgttcaac
atctttaatcatcagggaaatgcaaatcaaaacaacactgagattccact
tcactccagtcagaatggctaagatcaaaaactcaggtgacagcagatgc
tggcgaggatgtggagaaaggggaacactcctccattgttggtgggattg
caagcttgtacaaccactctggaaatcagtctggcgggtcctcagaaaat
tggacatagtactaccggaggatcccgcaatacctctcctgggcatatat
ccagaagatgtcccaaccggtaagaagaacacatgctccactatgttcat
agctgccttgtttataatagccagaagctggaaagaacccagatgcccct
caacagaggaatggatacagaaaatgtggtacatttacacaatggaatac
tactcagctattaaaaaggatgaatttttgaaattcttcggcaaatggat
ggacctggagggtatcatcctgaggtgaagtaactccatcaccaaagaac
tcgcccaatatcacctgatagtggatgttagcccgaaacctaggatacca
gaataacatacaacttgctaaccatgattcagaagacgagacaaagtgtg
gacctaccttttctttgaatgggacaaacacccatgcagataaggaacaa
atggactgtgcgaggaggacgtctagatgcatgcagactaactatacgct
ccaactgacatgtaacacccagaattcttagagac
gaattcagctcccatagctgaagaacatcagaaaaccacttgaattacta
acctcagattcttatttaagaatgttaataagtcagctaggagatggctc
agtacttaaaagcacttggcactcaaataggaaggcctgtgattagattt
ccagagctgtgcaaggctggacagggcagcataagtccacagttttactt
cttctagagtagcacttctaaatccgagggtgaagaccattcggtggatc
agaggacccactcataggagtctcctaagactttcagaaatttcagatat
ttacatcaccattcataacagcagcaaaactagggttatatagtagtaat
gaaaatgattttacggttgaaggtcaccataacataggaactgtagcagc
attgggaaggttgagaaccactgtttccagagcaagatgggtagtaaaga
cagaatgtactcccaggaagcacttgggagcagctaagctggtgctgaag
atgagaccctgtctcaaacaaggtagaatgtgatgacctcaggctgtcct
ctgaccaacttatatgcaccaaggcacatgaatgccctcaatcacacaga
tgaacatacacatacactgtacacaccacagacacacaatacacacacac
acaccatacagagcactgacacctattgaatatttgccatacacatacat
acacatcaccaacatcacacagacacaaacacttcacatgcacacacaaa
tactaacatacatatcacacacacaacatacatacatacatacatacatg
catacatacatacatagacacacagcaccacaagtacacagaaaaaaatc
catgtggcaaatatatattatacattactttaactttaaaagtttaaagc
tgttgggagtagtggcacacgccttaatcccagcactgggaagcagaggc
agcagattctgagttcaggccaaccttgtctaagagtgagttcagacgca
agctatacagagaacctctgtctcaaacacaaaaaaaaagttcaaagtta
tttcaatatcaatgcctcttaaaagtatgcttctaattgtgacctctata
aaactacaatataaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_53600673_53601816
seq2: B6Ng01-006B15.g_68_1183 (reverse)

seq1  TGTTATATATGGTAAAATTTTTATAGGAGTCCACAATTAAGAAGCTATAC  50
      |||||||| ||     | ||||||| |||  ||||||| |||||| ||||
seq2  TGTTATAT-TG----TAGTTTTATA-GAGGTCACAATT-AGAAGC-ATAC  42

seq1  TTTTAAAGAGACATTGGATATTTGAAATAAACTTTGAACTTTTTTTTTTT  100
      |||| ||||| |||| |||| ||||||| |||||||||||||||||||  
seq2  TTTT-AAGAGGCATT-GATA-TTGAAAT-AACTTTGAACTTTTTTTTT--  86

seq1  TGGTGTTTTGAGACAGAGTTTCTCTGTATAGCCTTGGCTGTCCTGGAACT  150
        ||| |||||||||||| |||||||||||| ||||  | |    |||||
seq2  --GTG-TTTGAGACAGAGGTTCTCTGTATAG-CTTGCGTCT----GAACT  128

seq1  CACTCTGTAGACCAGGTTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGC  200
      |||||| ||||| ||||||||| ||||||||| |||||| ||||||||||
seq2  CACTCT-TAGACAAGGTTGGCC-TGAACTCAG-AATCTG-CTGCCTCTGC  174

seq1  CTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACTACTCCCAACAGCTTTA  250
       |||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCCC-AGTGCTGGGATT-AAGGCGTGTGCCACTACTCCCAACAGCTTTA  222

seq1  AACTTTTAAAGTTAAAGTAATGTATAATATATATTTGCCACATGGATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAAAGTTAAAGTAATGTATAATATATATTTGCCACATGGATTTT  272

seq1  TTTCTGTGTACTTGTGGTGCTGTGTGTCTATGTATGTATGTATGCATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTACTTGTGGTGCTGTGTGTCTATGTATGTATGTATGCATGTA  322

seq1  TGTATGTATGTATGTATGTTGTGTGTGTGATATGTATGTTAGTATTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTATGTATGTTGTGTGTGTGATATGTATGTTAGTATTTGTG  372

seq1  TGTGCATGTGAAGTGTTTGTGTCTGTGTGATGTTGGTGATGTGTATGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGTGAAGTGTTTGTGTCTGTGTGATGTTGGTGATGTGTATGTAT  422

seq1  GTGTATGGCAAATATTCAATAGGTGTCAGTGCTCTGTATGGTGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGGCAAATATTCAATAGGTGTCAGTGCTCTGTATGGTGTGTGTGT  472

seq1  GTGTATTGTGTGTCTGTGGTGTGTACAGTGTATGTGTATGTTCATCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTGTGTGTCTGTGGTGTGTACAGTGTATGTGTATGTTCATCTGTG  522

seq1  TGATTGAGGGCATTCATGTGCCTTGGTGCATATAAGTTGGTCAGAGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAGGGCATTCATGTGCCTTGGTGCATATAAGTTGGTCAGAGGACA  572

seq1  GCCTGAGGTCATCACATTCTACCTTGTTTGAGACAGGGTCTCATCTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGGTCATCACATTCTACCTTGTTTGAGACAGGGTCTCATCTTCAG  622

seq1  CACCAGCTTAGCTGCTCCCAAGTGCTTCCTGGGAGTACATTCTGTCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTTAGCTGCTCCCAAGTGCTTCCTGGGAGTACATTCTGTCTTTA  672

seq1  CTACCCATCTTGCTCTGGAAACAGTGGTTCTCAACCTTCCCAATGCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCATCTTGCTCTGGAAACAGTGGTTCTCAACCTTCCCAATGCTGCT  722

seq1  ACAGTTCCTATGTTATGGTGACCTTCAACCGTAAAATCATTTTCATTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCCTATGTTATGGTGACCTTCAACCGTAAAATCATTTTCATTACT  772

seq1  ACTATATAACCCTAGTTTTGCTGCTGTTATGAATGGTGATGTAAATATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATAACCCTAGTTTTGCTGCTGTTATGAATGGTGATGTAAATATCT  822

seq1  GAAATTTCTGAAAGTCTTAGGAGACTCCTATGAGTGGGTCCTCTGATCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCTGAAAGTCTTAGGAGACTCCTATGAGTGGGTCCTCTGATCCA  872

seq1  CCGAATGGTCTTCACCCTCGGATTTAGAAGTGCTACTCTAGAAGAAGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATGGTCTTCACCCTCGGATTTAGAAGTGCTACTCTAGAAGAAGTAA  922

seq1  AACTGTGGACTTATGCTGCCCTGTCCAGCCTTGCACAGCTCTGGAAATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGACTTATGCTGCCCTGTCCAGCCTTGCACAGCTCTGGAAATCT  972

seq1  AATCACAGGCCTTCCTATTTGAGTGCCAAGTGCTTTTAAGTACTGAGCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGGCCTTCCTATTTGAGTGCCAAGTGCTTTTAAGTACTGAGCCA  1022

seq1  TCTCCTAGCTGACTTATTAACATTCTTAAATAAGAATCTGAGGTTAGTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAGCTGACTTATTAACATTCTTAAATAAGAATCTGAGGTTAGTAA  1072

seq1  TTCAAGTGGTTTTCTGATGTTCTTCAGCTATGGGAGCTGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGGTTTTCTGATGTTCTTCAGCTATGGGAGCTGAATTC  1116